Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40592 * 127.38359 * 2 1 4 4 N 1.28904 * 106.83243 * 180.02562 * 3 2 1 5 5 N 1.28418 * 110.33991 * 359.72185 * 4 3 2 6 6 C 1.31540 * 110.50463 * 0.46276 * 5 4 3 7 7 S 1.76192 * 126.45570 * 179.81390 * 6 5 4 8 8 C 1.81003 * 100.00074 * 359.68879 * 7 6 5 9 9 C 1.53000 * 109.47207 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47398 * 59.99934 * 9 8 7 11 11 O 1.42903 * 109.46726 * 299.99689 * 9 8 7 12 12 C 1.50699 * 109.47083 * 179.97438 * 9 8 7 13 13 H 1.08000 * 119.99792 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 H 1.08999 * 109.47191 * 269.95543 * 1 2 3 21 21 H 1.08997 * 109.47321 * 29.95335 * 1 2 3 22 22 H 1.09000 * 109.47191 * 149.95735 * 1 2 3 23 23 H 1.08992 * 109.46989 * 60.00027 * 8 7 6 24 24 H 1.09004 * 109.46834 * 299.99724 * 8 7 6 25 25 H 0.96700 * 114.00234 * 300.00043 * 11 9 8 26 26 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3186 1.1171 0.0000 4 7 3.5256 0.6646 -0.0006 5 7 3.5209 -0.6195 0.0049 6 6 2.2871 -1.0758 -0.0005 7 16 1.7967 -2.7681 -0.0008 8 6 3.4213 -3.5661 -0.0015 9 6 3.2431 -5.0857 -0.0025 10 1 2.6903 -5.3862 -0.8926 11 8 2.5188 -5.4810 1.1642 12 6 4.5957 -5.7501 -0.0037 13 1 5.4928 -5.1487 -0.0042 14 6 4.6880 -7.1258 -0.0042 15 7 5.8685 -7.7057 -0.0058 16 14 3.1365 -8.1661 -0.0041 17 1 2.7249 -8.4412 -1.4041 18 1 3.4008 -9.4491 0.6953 19 1 2.0504 -7.4349 0.6967 20 1 -0.3633 -0.0008 1.0276 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3633 -0.8896 -0.5145 23 1 3.9742 -3.2654 0.8883 24 1 3.9737 -3.2649 -0.8917 25 1 2.9529 -5.2452 1.9955 26 1 5.9335 -8.6735 -0.0065 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308414166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = 68.025791 kcal Electronic energy + Delta-G solvation = -13563.463876 eV Core-core repulsion = 10999.653438 eV Total energy + Delta-G solvation = -2563.810438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.058 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.76748 -36.52301 -35.15921 -32.40928 -32.16305 -30.18029 -28.36088 -25.84773 -23.54265 -23.00126 -20.97163 -18.12025 -17.49294 -16.74320 -16.64618 -15.07527 -14.68874 -14.64746 -14.35324 -13.91356 -13.76484 -12.94760 -12.70639 -12.23632 -12.10448 -11.75791 -11.24345 -11.05691 -10.89382 -10.75902 -10.46268 -10.35327 -10.13069 -9.23722 -8.79732 -8.56048 -7.82485 -6.25338 -4.40069 0.89881 0.91533 2.09023 2.29644 2.30872 3.30221 3.40607 3.63473 4.14877 4.40869 4.75529 4.78981 5.03680 5.05518 5.35750 5.38936 5.53270 5.59653 5.70434 5.96952 6.36896 6.97307 7.31666 8.13120 8.46907 8.63608 8.82252 9.35208 10.84436 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.054191 B = 0.006544 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.562433 B = 4277.742750 C = 4696.406960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.374 5.374 3 N -0.097 5.097 4 N -0.035 5.035 5 N -0.334 5.334 6 C 0.218 3.782 7 S 0.026 5.974 8 C -0.111 4.111 9 C 0.210 3.790 10 H 0.068 0.932 11 O -0.577 6.577 12 C -0.564 4.564 13 H 0.079 0.921 14 C 0.088 3.912 15 N -0.884 5.884 16 Si 0.869 3.131 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.216 1.216 20 H 0.092 0.908 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.362 0.638 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 10.326 0.504 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.174 5.174 3 N -0.085 5.085 4 N -0.031 5.031 5 N -0.191 5.191 6 C -0.166 4.166 7 S 0.252 5.748 8 C -0.260 4.260 9 C 0.150 3.850 10 H 0.085 0.915 11 O -0.384 6.384 12 C -0.603 4.603 13 H 0.097 0.903 14 C -0.118 4.118 15 N -0.520 5.520 16 Si 0.695 3.305 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.139 1.139 20 H 0.110 0.890 21 H 0.120 0.880 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.209 0.791 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.280 10.563 0.064 16.969 hybrid contribution 0.268 -0.283 0.263 0.470 sum -13.013 10.280 0.327 16.587 Atomic orbital electron populations 1.22190 0.72171 1.05861 1.04990 1.51443 1.09502 1.03379 1.53048 1.82389 0.95166 1.07586 1.23361 1.77832 1.12759 1.03236 1.09249 1.75022 1.16795 1.02886 1.24388 1.28253 0.89636 0.99024 0.99672 1.86052 1.15991 0.83022 1.89685 1.24843 0.92137 1.01347 1.07672 1.19636 0.93986 0.84816 0.86580 0.91485 1.86704 1.52169 1.82958 1.16535 1.21287 0.91287 0.92426 1.55281 0.90318 1.24962 0.96593 0.97949 0.92283 1.69934 1.23852 1.10678 1.47570 0.87046 0.85708 0.79165 0.78598 1.21150 1.21952 1.13858 0.88992 0.87969 0.88036 0.88381 0.87948 0.79085 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.40 59.85 0.68 1.37 15 2 N -0.37 -5.03 4.09 -68.10 -0.28 -5.31 15 3 N -0.10 -1.55 13.93 60.35 0.84 -0.71 15 4 N -0.03 -0.63 13.38 60.35 0.81 0.18 15 5 N -0.33 -6.10 11.57 30.50 0.35 -5.75 15 6 C 0.22 3.41 8.15 -89.18 -0.73 2.68 15 7 S 0.03 0.38 21.43 -107.50 -2.30 -1.93 15 8 C -0.11 -2.00 4.87 37.16 0.18 -1.82 15 9 C 0.21 4.41 2.36 -27.88 -0.07 4.34 15 10 H 0.07 1.43 7.57 -51.93 -0.39 1.04 15 11 O -0.58 -11.60 9.74 -35.23 -0.34 -11.95 15 12 C -0.56 -14.61 9.34 -34.44 -0.32 -14.93 15 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 15 14 C 0.09 2.40 5.47 -17.82 -0.10 2.30 15 15 N -0.88 -25.85 13.96 55.43 0.77 -25.07 15 16 Si 0.87 20.37 26.99 -169.99 -4.59 15.78 15 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 19 H -0.22 -4.87 5.31 56.52 0.30 -4.57 15 20 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.10 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.10 0.63 7.85 -51.93 -0.41 0.23 15 23 H 0.10 1.79 8.14 -51.92 -0.42 1.36 15 24 H 0.10 1.89 8.14 -51.91 -0.42 1.47 15 25 H 0.36 6.41 9.04 45.56 0.41 6.82 15 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 249.51 15.07 3.76 3.76 Total: -1.00 -31.40 249.51 -3.06 -34.47 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -1.74 Total: 2.57 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.35 Total: -6.05 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 2.50 Total: -36.66 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.34 Total: -11.95 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.59 Total: 15.78 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.30 Total: -1.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.40 -3.06 -34.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308414166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.493 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds