Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40592 * 127.38359 * 2 1 4 4 N 1.28904 * 106.83243 * 180.02562 * 3 2 1 5 5 N 1.28418 * 110.33991 * 359.72185 * 4 3 2 6 6 C 1.31540 * 110.50463 * 0.46276 * 5 4 3 7 7 S 1.76192 * 126.45570 * 179.81390 * 6 5 4 8 8 C 1.81003 * 100.00074 * 359.68879 * 7 6 5 9 9 C 1.53000 * 109.47207 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47398 * 59.99934 * 9 8 7 11 11 O 1.42903 * 109.46726 * 299.99689 * 9 8 7 12 12 C 1.50699 * 109.47083 * 179.97438 * 9 8 7 13 13 H 1.08000 * 119.99792 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 H 1.08999 * 109.47191 * 269.95543 * 1 2 3 21 21 H 1.08997 * 109.47321 * 29.95335 * 1 2 3 22 22 H 1.09000 * 109.47191 * 149.95735 * 1 2 3 23 23 H 1.08992 * 109.46989 * 60.00027 * 8 7 6 24 24 H 1.09004 * 109.46834 * 299.99724 * 8 7 6 25 25 H 0.96700 * 114.00234 * 300.00043 * 11 9 8 26 26 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3186 1.1171 0.0000 4 7 3.5256 0.6646 -0.0006 5 7 3.5209 -0.6195 0.0049 6 6 2.2871 -1.0758 -0.0005 7 16 1.7967 -2.7681 -0.0008 8 6 3.4213 -3.5661 -0.0015 9 6 3.2431 -5.0857 -0.0025 10 1 2.6903 -5.3862 -0.8926 11 8 2.5188 -5.4810 1.1642 12 6 4.5957 -5.7501 -0.0037 13 1 5.4928 -5.1487 -0.0042 14 6 4.6880 -7.1258 -0.0042 15 7 5.8685 -7.7057 -0.0058 16 14 3.1365 -8.1661 -0.0041 17 1 2.7249 -8.4412 -1.4041 18 1 3.4008 -9.4491 0.6953 19 1 2.0504 -7.4349 0.6967 20 1 -0.3633 -0.0008 1.0276 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3633 -0.8896 -0.5145 23 1 3.9742 -3.2654 0.8883 24 1 3.9737 -3.2649 -0.8917 25 1 2.9529 -5.2452 1.9955 26 1 5.9335 -8.6735 -0.0065 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308414166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = 43.176173 kcal Electronic energy + Delta-G solvation = -13564.541437 eV Core-core repulsion = 10999.653438 eV Total energy + Delta-G solvation = -2564.887998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.058 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.98028 -38.20923 -36.20190 -34.43793 -33.41665 -31.80717 -29.23557 -27.71191 -24.73204 -24.21924 -22.66462 -19.66387 -19.01465 -17.88512 -17.76943 -16.90383 -16.32625 -16.27939 -15.66594 -14.93163 -14.78008 -14.68453 -13.96826 -13.62269 -13.50968 -13.19360 -12.97314 -12.61737 -12.22639 -12.14875 -12.04387 -11.70869 -11.51307 -11.11294 -10.82057 -10.31303 -9.00963 -8.34098 -6.52182 -0.30567 -0.25907 0.88351 1.01702 1.17312 1.45596 1.51702 1.78900 2.45391 3.03060 3.16040 3.72899 3.91186 4.02007 4.11357 4.14655 4.25565 4.50630 4.57324 4.89406 5.00608 5.29077 5.38188 6.07456 6.61445 7.12046 7.23128 7.29437 8.79705 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.054191 B = 0.006544 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.562433 B = 4277.742750 C = 4696.406960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.357 5.357 3 N -0.098 5.098 4 N -0.063 5.063 5 N -0.366 5.366 6 C 0.203 3.797 7 S 0.094 5.906 8 C -0.118 4.118 9 C 0.220 3.780 10 H 0.073 0.927 11 O -0.575 6.575 12 C -0.565 4.565 13 H 0.038 0.962 14 C 0.031 3.969 15 N -0.938 5.938 16 Si 0.937 3.063 17 H -0.282 1.282 18 H -0.300 1.300 19 H -0.194 1.194 20 H 0.116 0.884 21 H 0.125 0.875 22 H 0.120 0.880 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.375 0.625 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 10.815 0.683 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.158 5.158 3 N -0.086 5.086 4 N -0.058 5.058 5 N -0.224 5.224 6 C -0.181 4.181 7 S 0.321 5.679 8 C -0.267 4.267 9 C 0.160 3.840 10 H 0.091 0.909 11 O -0.382 6.382 12 C -0.604 4.604 13 H 0.057 0.943 14 C -0.170 4.170 15 N -0.576 5.576 16 Si 0.760 3.240 17 H -0.209 1.209 18 H -0.227 1.227 19 H -0.116 1.116 20 H 0.134 0.866 21 H 0.144 0.856 22 H 0.138 0.862 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.224 0.776 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.603 11.079 0.252 19.961 hybrid contribution 1.229 -0.306 0.224 1.286 sum -15.374 10.772 0.476 18.779 Atomic orbital electron populations 1.22819 0.68671 1.08026 1.07225 1.51784 1.11130 1.01914 1.50929 1.82276 0.95073 1.08553 1.22708 1.77816 1.13815 1.03356 1.10857 1.74923 1.18708 1.03316 1.25451 1.28338 0.89555 0.99920 1.00244 1.85622 1.11253 0.81402 1.89642 1.24463 0.95098 1.00137 1.07022 1.19310 0.91223 0.86366 0.87105 0.90946 1.86620 1.51625 1.83130 1.16837 1.21621 0.92683 0.92336 1.53810 0.94330 1.25886 0.99512 0.99506 0.92084 1.70081 1.26387 1.10995 1.50143 0.86015 0.82213 0.77051 0.78676 1.20865 1.22693 1.11576 0.86610 0.85624 0.86159 0.89058 0.88981 0.77630 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 11.40 127.77 1.46 2.25 15 2 N -0.36 -8.63 4.09 -369.38 -1.51 -10.14 15 3 N -0.10 -2.96 13.93 37.02 0.52 -2.44 15 4 N -0.06 -2.23 13.38 37.02 0.50 -1.74 15 5 N -0.37 -13.16 11.57 -57.41 -0.66 -13.83 15 6 C 0.20 5.94 8.15 179.84 1.47 7.41 15 7 S 0.09 2.49 21.43 -56.49 -1.21 1.28 15 8 C -0.12 -4.11 4.87 71.98 0.35 -3.76 15 9 C 0.22 8.93 2.36 29.85 0.07 9.00 15 10 H 0.07 2.91 7.57 -2.39 -0.02 2.89 15 11 O -0.57 -21.40 9.74 -148.98 -1.45 -22.85 15 12 C -0.57 -29.68 9.34 25.60 0.24 -29.44 15 13 H 0.04 2.28 7.99 -2.91 -0.02 2.25 15 14 C 0.03 1.68 5.47 84.65 0.46 2.14 15 15 N -0.94 -56.29 13.96 21.45 0.30 -55.99 15 16 Si 0.94 41.59 26.99 68.60 1.85 43.44 15 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 18 H -0.30 -13.57 7.11 99.48 0.71 -12.86 15 19 H -0.19 -7.88 5.31 99.48 0.53 -7.35 15 20 H 0.12 0.83 8.14 -2.39 -0.02 0.81 15 21 H 0.13 0.87 8.14 -2.39 -0.02 0.85 15 22 H 0.12 0.94 7.85 -2.39 -0.02 0.92 15 23 H 0.09 3.30 8.14 -2.40 -0.02 3.28 15 24 H 0.09 3.41 8.14 -2.39 -0.02 3.39 15 25 H 0.37 12.29 9.04 -74.06 -0.67 11.62 15 26 H 0.27 15.14 8.31 -92.71 -0.77 14.37 15 Total: -1.00 -68.87 249.51 2.74 -66.14 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.36 Total: 8.53 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 4.05 Total: -12.40 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -0.87 Total: -84.14 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.45 Total: -22.85 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.85 Total: 43.44 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.21 Total: 1.28 kcal Total: -68.87 2.74 -66.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308414166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.312 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds