Wall clock time and date at job start Sun Mar 29 2020 21:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48505 * 109.46882 * 269.99664 * 3 2 1 5 5 H 1.48499 * 109.47163 * 29.99770 * 3 2 1 6 6 H 1.48506 * 109.47037 * 150.00186 * 3 2 1 7 7 C 1.38762 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 0.02562 * 7 2 1 9 9 O 1.34915 * 119.99847 * 180.02562 * 7 2 1 10 10 C 1.34311 * 117.00457 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99447 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00415 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.46846 * 180.02562 * 12 10 9 14 14 C 1.52575 * 109.22695 * 63.76511 * 13 12 10 15 15 C 1.53102 * 109.95374 * 190.99545 * 14 13 12 16 16 S 1.81739 * 108.84117 * 296.97150 * 15 14 13 17 17 C 1.81751 * 102.22279 * 53.26834 * 16 15 14 18 18 C 1.52586 * 109.22423 * 184.99890 * 13 12 10 19 19 H 0.97003 * 119.99722 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46932 * 60.00248 * 12 10 9 21 21 H 1.09000 * 109.47188 * 299.99464 * 12 10 9 22 22 H 1.09004 * 109.18795 * 304.37898 * 13 12 10 23 23 H 1.09000 * 109.39151 * 311.13902 * 14 13 12 24 24 H 1.09004 * 109.39609 * 70.84538 * 14 13 12 25 25 H 1.09003 * 109.57550 * 177.16316 * 15 14 13 26 26 H 1.08997 * 109.57619 * 56.78199 * 15 14 13 27 27 H 1.08999 * 109.57590 * 186.93240 * 17 16 15 28 28 H 1.08992 * 109.57373 * 66.53609 * 17 16 15 29 29 H 1.09003 * 109.38723 * 289.15302 * 18 13 12 30 30 H 1.09001 * 109.38828 * 48.85162 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4400 0.7000 7 6 2.0081 -1.2018 0.0005 8 1 1.4680 -2.1370 0.0005 9 8 3.3572 -1.2018 0.0011 10 6 3.9670 -2.3985 0.0021 11 8 3.3068 -3.4151 0.0030 12 6 5.4720 -2.4775 0.0033 13 6 5.9056 -3.9448 0.0037 14 6 5.4384 -4.6071 -1.2889 15 6 5.6171 -6.1246 -1.1926 16 16 7.3868 -6.4969 -1.0125 17 6 7.8551 -5.4627 0.4069 18 6 7.4244 -4.0197 0.1305 19 1 -0.4850 0.8401 -0.0004 20 1 5.8610 -1.9830 0.8934 21 1 5.8624 -1.9839 -0.8866 22 1 5.4490 -4.4531 0.8530 23 1 4.3859 -4.3765 -1.4538 24 1 6.0260 -4.2258 -2.1240 25 1 5.2352 -6.5956 -2.0984 26 1 5.0744 -6.5020 -0.3260 27 1 8.9355 -5.5010 0.5460 28 1 7.3560 -5.8271 1.3046 29 1 7.8823 -3.6767 -0.7973 30 1 7.7509 -3.3811 0.9512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308424183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:32 Heat of formation + Delta-G solvation = -100.126926 kcal Electronic energy + Delta-G solvation = -14188.188143 eV Core-core repulsion = 11688.333649 eV Total energy + Delta-G solvation = -2499.854495 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50066 -37.38184 -35.13772 -32.32786 -31.45899 -30.51535 -26.12397 -24.27778 -23.04925 -20.60280 -19.50807 -17.98333 -17.01572 -16.50946 -15.23732 -15.04789 -14.56702 -14.43575 -13.96510 -13.64612 -13.45803 -12.86175 -12.71292 -12.38999 -11.98695 -11.83773 -11.35216 -11.21935 -11.16505 -10.63865 -10.54963 -10.42258 -10.14318 -9.73505 -9.67580 -9.05711 -8.69273 -7.70249 -6.38562 -4.14284 1.79266 2.53530 3.12171 3.22360 3.33515 3.39484 4.05623 4.23225 4.66779 4.72870 4.89211 5.01336 5.09184 5.23376 5.30758 5.45266 5.57156 5.66304 5.68364 5.83079 5.87709 6.00424 6.07729 6.37798 6.45648 6.54489 7.73636 8.02209 8.60906 9.00233 9.67748 10.70074 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.059462 B = 0.005852 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.774135 B = 4783.494576 C = 5091.399929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.382 4.382 8 H 0.109 0.891 9 O -0.254 6.254 10 C 0.408 3.592 11 O -0.538 6.538 12 C -0.101 4.101 13 C -0.080 4.080 14 C -0.125 4.125 15 C -0.068 4.068 16 S -0.290 6.290 17 C -0.075 4.075 18 C -0.117 4.117 19 H 0.279 0.721 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.117 -6.276 -0.258 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.126 0.874 9 O -0.162 6.162 10 C 0.254 3.746 11 O -0.433 6.433 12 C -0.139 4.139 13 C -0.099 4.099 14 C -0.163 4.163 15 C -0.216 4.216 16 S -0.064 6.064 17 C -0.223 4.223 18 C -0.156 4.156 19 H 0.089 0.911 20 H 0.111 0.889 21 H 0.111 0.889 22 H 0.098 0.902 23 H 0.120 0.880 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.383 -7.101 -0.856 16.965 hybrid contribution -0.608 1.528 0.736 1.802 sum 14.775 -5.574 -0.119 15.792 Atomic orbital electron populations 1.69608 1.05722 1.28377 1.47786 1.24556 0.95006 0.98679 0.95599 0.86221 0.80259 0.81557 0.78908 1.19873 1.20772 1.18470 1.20643 0.76272 0.96907 1.51967 0.87355 1.83525 1.23926 1.31642 1.77142 1.22995 0.90704 0.82543 0.78385 1.90557 1.67143 1.36105 1.49544 1.21188 0.90545 0.97513 1.04610 1.20900 0.94347 0.95009 0.99618 1.21930 1.04821 0.92381 0.97209 1.23435 0.92454 1.00017 1.05734 1.86706 1.13896 1.61630 1.44175 1.23387 1.04267 0.96848 0.97843 1.21787 0.95770 0.94954 1.03119 0.91057 0.88866 0.88881 0.90210 0.88040 0.91351 0.88044 0.89701 0.88035 0.89890 0.90478 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.96 55.48 0.77 -25.14 16 2 C 0.07 1.86 5.49 -17.53 -0.10 1.76 16 3 Si 0.91 21.29 28.62 -169.99 -4.86 16.43 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.38 -11.28 10.10 30.93 0.31 -10.97 16 8 H 0.11 3.52 7.09 -52.49 -0.37 3.15 16 9 O -0.25 -6.59 8.58 -20.69 -0.18 -6.77 16 10 C 0.41 9.13 7.51 36.01 0.27 9.40 16 11 O -0.54 -13.38 13.18 -19.06 -0.25 -13.64 16 12 C -0.10 -1.57 5.26 -27.88 -0.15 -1.71 16 13 C -0.08 -1.10 1.60 -91.05 -0.15 -1.25 16 14 C -0.12 -1.79 4.83 -26.90 -0.13 -1.92 16 15 C -0.07 -0.89 6.45 37.21 0.24 -0.65 16 16 S -0.29 -3.59 22.33 -107.50 -2.40 -5.99 16 17 C -0.08 -0.77 6.46 37.21 0.24 -0.53 16 18 C -0.12 -1.24 5.05 -26.89 -0.14 -1.38 16 19 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 20 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 21 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 22 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 23 H 0.10 1.79 5.68 -51.93 -0.29 1.50 16 24 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 30 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 LS Contribution 262.67 15.07 3.96 3.96 Total: -1.00 -31.40 262.67 -6.55 -37.95 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.00 Total: 0.43 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.41 Total: -7.24 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.77 Total: -25.14 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.43 Total: -20.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.86 Total: 16.43 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.40 Total: -5.99 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.40 -6.55 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308424183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.173 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds