Wall clock time and date at job start Sun Mar 29 2020 21:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48505 * 109.46882 * 269.99664 * 3 2 1 5 5 H 1.48499 * 109.47163 * 29.99770 * 3 2 1 6 6 H 1.48506 * 109.47037 * 150.00186 * 3 2 1 7 7 C 1.38762 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 0.02562 * 7 2 1 9 9 O 1.34915 * 119.99847 * 180.02562 * 7 2 1 10 10 C 1.34311 * 117.00457 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99447 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00415 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.46846 * 180.02562 * 12 10 9 14 14 C 1.52575 * 109.22695 * 63.76511 * 13 12 10 15 15 C 1.53102 * 109.95374 * 190.99545 * 14 13 12 16 16 S 1.81739 * 108.84117 * 296.97150 * 15 14 13 17 17 C 1.81751 * 102.22279 * 53.26834 * 16 15 14 18 18 C 1.52586 * 109.22423 * 184.99890 * 13 12 10 19 19 H 0.97003 * 119.99722 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46932 * 60.00248 * 12 10 9 21 21 H 1.09000 * 109.47188 * 299.99464 * 12 10 9 22 22 H 1.09004 * 109.18795 * 304.37898 * 13 12 10 23 23 H 1.09000 * 109.39151 * 311.13902 * 14 13 12 24 24 H 1.09004 * 109.39609 * 70.84538 * 14 13 12 25 25 H 1.09003 * 109.57550 * 177.16316 * 15 14 13 26 26 H 1.08997 * 109.57619 * 56.78199 * 15 14 13 27 27 H 1.08999 * 109.57590 * 186.93240 * 17 16 15 28 28 H 1.08992 * 109.57373 * 66.53609 * 17 16 15 29 29 H 1.09003 * 109.38723 * 289.15302 * 18 13 12 30 30 H 1.09001 * 109.38828 * 48.85162 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4400 0.7000 7 6 2.0081 -1.2018 0.0005 8 1 1.4680 -2.1370 0.0005 9 8 3.3572 -1.2018 0.0011 10 6 3.9670 -2.3985 0.0021 11 8 3.3068 -3.4151 0.0030 12 6 5.4720 -2.4775 0.0033 13 6 5.9056 -3.9448 0.0037 14 6 5.4384 -4.6071 -1.2889 15 6 5.6171 -6.1246 -1.1926 16 16 7.3868 -6.4969 -1.0125 17 6 7.8551 -5.4627 0.4069 18 6 7.4244 -4.0197 0.1305 19 1 -0.4850 0.8401 -0.0004 20 1 5.8610 -1.9830 0.8934 21 1 5.8624 -1.9839 -0.8866 22 1 5.4490 -4.4531 0.8530 23 1 4.3859 -4.3765 -1.4538 24 1 6.0260 -4.2258 -2.1240 25 1 5.2352 -6.5956 -2.0984 26 1 5.0744 -6.5020 -0.3260 27 1 8.9355 -5.5010 0.5460 28 1 7.3560 -5.8271 1.3046 29 1 7.8823 -3.6767 -0.7973 30 1 7.7509 -3.3811 0.9512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308424183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:31 Heat of formation + Delta-G solvation = -119.256505 kcal Electronic energy + Delta-G solvation = -14189.017664 eV Core-core repulsion = 11688.333649 eV Total energy + Delta-G solvation = -2500.684015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.30597 -38.72909 -36.96599 -34.49797 -32.43103 -31.79280 -27.94540 -25.77153 -24.04881 -22.02890 -20.95405 -20.12350 -18.56505 -17.81541 -16.94555 -16.80384 -16.00556 -15.52588 -15.29081 -15.00502 -14.58951 -14.52440 -14.14532 -13.76508 -13.52011 -13.17432 -12.82943 -12.44055 -12.35456 -12.27755 -12.17834 -11.85591 -11.71759 -11.38769 -10.93139 -10.83049 -10.55545 -8.68157 -8.54495 -6.41136 0.85130 1.31318 1.34218 1.53867 1.58562 1.61311 2.27226 2.46973 2.91847 3.54994 3.70938 3.89139 4.05438 4.20711 4.25191 4.42187 4.46065 4.57917 4.67218 4.81160 4.82092 4.87328 5.01074 5.05571 5.28332 5.38485 5.53110 5.90833 6.58087 6.84430 7.62571 8.58769 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.059462 B = 0.005852 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.774135 B = 4783.494576 C = 5091.399929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.408 4.408 8 H 0.055 0.945 9 O -0.263 6.263 10 C 0.405 3.595 11 O -0.569 6.569 12 C -0.090 4.090 13 C -0.077 4.077 14 C -0.123 4.123 15 C -0.067 4.067 16 S -0.302 6.302 17 C -0.071 4.071 18 C -0.108 4.108 19 H 0.288 0.712 20 H 0.126 0.874 21 H 0.121 0.879 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.472 -4.803 0.050 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.484 4.484 8 H 0.073 0.927 9 O -0.173 6.173 10 C 0.253 3.747 11 O -0.465 6.465 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.161 4.161 15 C -0.215 4.215 16 S -0.076 6.076 17 C -0.218 4.218 18 C -0.146 4.146 19 H 0.098 0.902 20 H 0.144 0.856 21 H 0.139 0.861 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.741 -5.665 -0.548 19.586 hybrid contribution -1.649 0.878 0.644 1.976 sum 17.091 -4.787 0.096 17.749 Atomic orbital electron populations 1.69717 1.07711 1.30159 1.48543 1.25620 0.95982 1.02872 0.94225 0.85044 0.79061 0.75611 0.79784 1.18479 1.19248 1.17068 1.20294 0.78049 0.95591 1.54424 0.92728 1.83541 1.21749 1.33361 1.78602 1.24634 0.93497 0.81133 0.75441 1.90559 1.68750 1.37080 1.50069 1.21436 0.84541 0.99414 1.07387 1.20919 0.96989 0.93420 0.98262 1.21855 1.02391 0.93550 0.98352 1.23318 0.93567 0.99098 1.05516 1.86765 1.12497 1.62747 1.45615 1.23514 1.05806 0.96002 0.96511 1.21731 0.92463 0.95622 1.04821 0.90187 0.85639 0.86071 0.92109 0.92198 0.90067 0.87749 0.90806 0.85436 0.89729 0.89387 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.03 13.96 21.63 0.30 -55.73 16 2 C 0.01 0.72 5.49 84.88 0.47 1.19 16 3 Si 0.99 43.22 28.62 68.60 1.96 45.18 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.41 -25.03 10.10 67.95 0.69 -24.34 16 8 H 0.05 3.83 7.09 -2.91 -0.02 3.81 16 9 O -0.26 -13.73 8.58 14.93 0.13 -13.60 16 10 C 0.41 18.25 7.51 71.24 0.54 18.78 16 11 O -0.57 -29.63 13.18 20.76 0.27 -29.36 16 12 C -0.09 -2.57 5.26 29.85 0.16 -2.41 16 13 C -0.08 -1.96 1.60 -11.07 -0.02 -1.98 16 14 C -0.12 -3.47 4.83 30.49 0.15 -3.32 16 15 C -0.07 -1.73 6.45 72.02 0.46 -1.26 16 16 S -0.30 -6.89 22.33 -56.49 -1.26 -8.15 16 17 C -0.07 -1.20 6.46 72.01 0.46 -0.73 16 18 C -0.11 -1.82 5.05 30.49 0.15 -1.66 16 19 H 0.29 15.80 8.31 -92.71 -0.77 15.03 16 20 H 0.13 2.86 8.09 -2.39 -0.02 2.84 16 21 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 22 H 0.06 1.79 7.90 -2.38 -0.02 1.77 16 23 H 0.06 2.20 5.68 -2.39 -0.01 2.19 16 24 H 0.08 2.05 8.06 -2.39 -0.02 2.03 16 25 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 30 H 0.10 1.28 8.05 -2.39 -0.02 1.26 16 Total: -1.00 -72.23 262.67 5.59 -66.65 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.12 Total: 10.75 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 3.06 Total: -15.75 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.30 Total: -55.73 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: 0.40 Total: -42.96 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.96 Total: 45.18 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -1.26 Total: -8.15 kcal Total: -72.23 5.59 -66.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308424183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.609 kcal (2) G-P(sol) polarization free energy of solvation -72.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds