Wall clock time and date at job start Sun Mar 29 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00242 * 2 1 4 4 C 1.52995 * 109.54579 * 302.67612 * 3 2 1 5 5 N 1.46898 * 109.47173 * 301.06545 * 4 3 2 6 6 C 1.46895 * 111.00315 * 173.88362 * 5 4 3 7 7 C 1.50699 * 109.47225 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00457 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99689 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00332 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99593 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47266 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46614 * 120.00236 * 11 9 7 14 14 H 1.48500 * 109.46833 * 239.99841 * 11 9 7 15 15 C 1.53180 * 109.53945 * 62.85215 * 3 2 1 16 16 C 1.53108 * 109.15530 * 63.06270 * 15 3 2 17 17 O 1.42905 * 109.48854 * 57.47507 * 16 15 3 18 18 C 1.42898 * 114.09695 * 298.89050 * 17 16 15 19 19 C 1.53085 * 109.41900 * 61.15234 * 18 17 16 20 20 H 1.09007 * 109.46903 * 296.82329 * 1 2 3 21 21 H 1.09003 * 109.46889 * 56.81635 * 1 2 3 22 22 H 1.08996 * 109.47527 * 176.82326 * 1 2 3 23 23 H 1.08996 * 109.46809 * 181.06816 * 4 3 2 24 24 H 1.09001 * 109.47100 * 61.06743 * 4 3 2 25 25 H 1.00905 * 111.00107 * 297.84095 * 5 4 3 26 26 H 1.09003 * 109.47158 * 300.00308 * 6 5 4 27 27 H 1.08998 * 109.47456 * 59.99802 * 6 5 4 28 28 H 0.97004 * 120.00099 * 179.97438 * 10 9 7 29 29 H 1.08995 * 109.52300 * 182.87898 * 15 3 2 30 30 H 1.08998 * 109.52523 * 303.07343 * 15 3 2 31 31 H 1.08993 * 109.41191 * 297.49182 * 16 15 3 32 32 H 1.09002 * 109.48650 * 177.50822 * 16 15 3 33 33 H 1.09002 * 109.48039 * 301.17191 * 18 17 16 34 34 H 1.08996 * 109.49107 * 181.14688 * 18 17 16 35 35 H 1.09001 * 109.52561 * 182.48234 * 19 18 17 36 36 H 1.09008 * 109.57178 * 62.33492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5074 2.0897 -1.2136 5 7 1.8668 1.3718 -2.4438 6 6 1.2756 2.0187 -3.6227 7 6 1.6648 1.2555 -4.8625 8 1 2.2885 0.3775 -4.7827 9 6 1.2237 1.6777 -6.0988 10 7 0.4638 2.7467 -6.1960 11 14 1.7067 0.7321 -7.6357 12 1 2.5604 -0.4229 -7.2585 13 1 0.4834 0.2406 -8.3193 14 1 2.4597 1.6268 -8.5511 15 6 1.6169 2.0414 1.2845 16 6 2.1935 1.2927 2.4892 17 8 3.6124 1.1908 2.3526 18 6 4.0368 0.4702 1.1939 19 6 3.5361 1.1869 -0.0628 20 1 -0.3633 0.4638 0.9172 21 1 -0.3633 0.5625 -0.8601 22 1 -0.3634 -1.0260 -0.0569 23 1 1.9661 3.0784 -1.2228 24 1 0.4237 2.1924 -1.1562 25 1 2.8684 1.2945 -2.5379 26 1 0.1899 2.0262 -3.5269 27 1 1.6408 3.0430 -3.6965 28 1 0.1537 3.0439 -7.0658 29 1 2.0178 3.0547 1.2611 30 1 0.5305 2.0802 1.3641 31 1 1.7602 0.2937 2.5361 32 1 1.9544 1.8359 3.4034 33 1 3.6275 -0.5396 1.2237 34 1 5.1254 0.4208 1.1749 35 1 3.8211 0.6153 -0.9461 36 1 3.9770 2.1825 -0.1155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308536690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:24 Heat of formation + Delta-G solvation = -96.237585 kcal Electronic energy + Delta-G solvation = -16891.353296 eV Core-core repulsion = 14182.466342 eV Total energy + Delta-G solvation = -2708.886955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02695 -37.16502 -34.95030 -32.82516 -31.72258 -31.13120 -27.71084 -26.50289 -25.21946 -23.48844 -22.20707 -21.20528 -19.56132 -16.66558 -16.55192 -15.94315 -15.58488 -15.26884 -15.00826 -14.58318 -14.46686 -13.87736 -13.37753 -12.71450 -12.63219 -12.58376 -12.17840 -12.00455 -11.54845 -11.34908 -11.24813 -11.12066 -10.73851 -10.70075 -10.33743 -10.12818 -9.97710 -9.55896 -9.29843 -8.90297 -8.49826 -7.27723 -6.04785 -4.06548 3.30268 3.37501 3.43090 3.91207 4.03727 4.42271 4.72648 4.85841 4.94727 5.06243 5.27670 5.31401 5.43870 5.49267 5.58357 5.64019 5.68637 5.74794 5.77659 5.87289 5.98977 6.00513 6.10255 6.19283 6.27195 6.37760 7.19922 7.23348 7.37964 7.55585 7.77683 8.10556 8.37084 8.59382 9.03306 9.58642 11.06446 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.045936 B = 0.005734 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.402935 B = 4882.111046 C = 5024.012319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.122 3.878 4 C 0.036 3.964 5 N -0.678 5.678 6 C 0.194 3.806 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.899 3.101 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C -0.182 4.182 16 C 0.069 3.931 17 O -0.388 6.388 18 C 0.065 3.935 19 C -0.141 4.141 20 H 0.030 0.970 21 H 0.054 0.946 22 H 0.079 0.921 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.329 0.671 26 H 0.025 0.975 27 H -0.016 1.016 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -2.310 15.330 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.082 3.918 4 C -0.095 4.095 5 N -0.309 5.309 6 C 0.067 3.933 7 C -0.550 4.550 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.727 3.273 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.220 4.220 16 C -0.008 4.008 17 O -0.307 6.307 18 C -0.012 4.012 19 C -0.179 4.179 20 H 0.048 0.952 21 H 0.073 0.927 22 H 0.097 0.903 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.146 0.854 26 H 0.044 0.956 27 H 0.002 0.998 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.354 -2.749 15.374 15.794 hybrid contribution 0.147 0.646 -1.307 1.465 sum 2.500 -2.103 14.067 14.442 Atomic orbital electron populations 1.22693 0.81838 1.02352 0.99682 1.87898 1.19259 1.26212 1.94715 1.21465 0.93454 0.84069 0.92782 1.22426 1.00676 0.94693 0.91682 1.60579 1.15550 1.53127 1.01639 1.19558 0.95167 0.92179 0.86357 1.21219 1.31370 1.11817 0.90618 0.91858 1.24998 0.95195 0.95180 0.99256 1.69974 1.35394 1.24086 1.24430 0.86422 0.78288 0.79867 0.82730 1.19610 1.21000 1.21093 1.22774 1.01950 1.00863 0.96449 1.22425 0.81448 0.99749 0.97205 1.87868 1.21794 1.76413 1.44611 1.22532 0.99381 0.94977 0.84269 1.22159 0.93468 1.02356 0.99923 0.95191 0.92724 0.90267 0.95666 0.91332 0.85389 0.95645 0.99787 0.92979 0.90321 0.90559 0.92769 0.89400 0.92299 0.89159 0.89150 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.22 101.05 1.03 1.47 16 2 O -0.36 -5.83 9.16 -35.23 -0.32 -6.15 16 3 C 0.12 1.83 0.47 -90.44 -0.04 1.79 16 4 C 0.04 0.64 4.19 -3.83 -0.02 0.62 16 5 N -0.68 -14.60 6.24 -115.07 -0.72 -15.32 16 6 C 0.19 5.12 5.43 -4.98 -0.03 5.09 16 7 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 11 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C -0.18 -2.27 4.72 -26.58 -0.13 -2.40 16 16 C 0.07 0.81 6.69 37.21 0.25 1.06 16 17 O -0.39 -5.23 10.77 -35.23 -0.38 -5.61 16 18 C 0.06 0.82 6.69 37.20 0.25 1.07 16 19 C -0.14 -1.97 4.75 -26.60 -0.13 -2.09 16 20 H 0.03 0.35 6.58 -51.93 -0.34 0.01 16 21 H 0.05 0.88 6.23 -51.93 -0.32 0.56 16 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 1.24 6.48 -51.93 -0.34 0.91 16 25 H 0.33 6.81 7.16 -39.29 -0.28 6.53 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.88 6.53 -51.93 -0.34 0.54 16 31 H 0.05 0.65 7.82 -51.93 -0.41 0.24 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.33 6.92 -51.93 -0.36 0.97 16 36 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -30.91 285.06 -6.35 -37.27 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.72 Total: 1.84 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 0.78 Total: -6.85 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.02 Total: -41.59 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.70 Total: -11.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.91 -6.35 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308536690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.972 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds