Wall clock time and date at job start Sun Mar 29 2020 21:31:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42906 * 114.00242 * 2 1
4 4 C 1.52995 * 109.54579 * 302.67612 * 3 2 1
5 5 N 1.46898 * 109.47173 * 301.06545 * 4 3 2
6 6 C 1.46895 * 111.00315 * 173.88362 * 5 4 3
7 7 C 1.50699 * 109.47225 * 180.02562 * 6 5 4
8 8 H 1.07993 * 120.00457 * 0.02562 * 7 6 5
9 9 C 1.37881 * 119.99689 * 179.97438 * 7 6 5
10 10 N 1.31514 * 120.00332 * 0.02562 * 9 7 6
11 11 Si 1.86807 * 119.99593 * 179.97438 * 9 7 6
12 12 H 1.48494 * 109.47266 * 0.02562 * 11 9 7
13 13 H 1.48503 * 109.46614 * 120.00236 * 11 9 7
14 14 H 1.48500 * 109.46833 * 239.99841 * 11 9 7
15 15 C 1.53180 * 109.53945 * 62.85215 * 3 2 1
16 16 C 1.53108 * 109.15530 * 63.06270 * 15 3 2
17 17 O 1.42905 * 109.48854 * 57.47507 * 16 15 3
18 18 C 1.42898 * 114.09695 * 298.89050 * 17 16 15
19 19 C 1.53085 * 109.41900 * 61.15234 * 18 17 16
20 20 H 1.09007 * 109.46903 * 296.82329 * 1 2 3
21 21 H 1.09003 * 109.46889 * 56.81635 * 1 2 3
22 22 H 1.08996 * 109.47527 * 176.82326 * 1 2 3
23 23 H 1.08996 * 109.46809 * 181.06816 * 4 3 2
24 24 H 1.09001 * 109.47100 * 61.06743 * 4 3 2
25 25 H 1.00905 * 111.00107 * 297.84095 * 5 4 3
26 26 H 1.09003 * 109.47158 * 300.00308 * 6 5 4
27 27 H 1.08998 * 109.47456 * 59.99802 * 6 5 4
28 28 H 0.97004 * 120.00099 * 179.97438 * 10 9 7
29 29 H 1.08995 * 109.52300 * 182.87898 * 15 3 2
30 30 H 1.08998 * 109.52523 * 303.07343 * 15 3 2
31 31 H 1.08993 * 109.41191 * 297.49182 * 16 15 3
32 32 H 1.09002 * 109.48650 * 177.50822 * 16 15 3
33 33 H 1.09002 * 109.48039 * 301.17191 * 18 17 16
34 34 H 1.08996 * 109.49107 * 181.14688 * 18 17 16
35 35 H 1.09001 * 109.52561 * 182.48234 * 19 18 17
36 36 H 1.09008 * 109.57178 * 62.33492 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 1.5074 2.0897 -1.2136
5 7 1.8668 1.3718 -2.4438
6 6 1.2756 2.0187 -3.6227
7 6 1.6648 1.2555 -4.8625
8 1 2.2885 0.3775 -4.7827
9 6 1.2237 1.6777 -6.0988
10 7 0.4638 2.7467 -6.1960
11 14 1.7067 0.7321 -7.6357
12 1 2.5604 -0.4229 -7.2585
13 1 0.4834 0.2406 -8.3193
14 1 2.4597 1.6268 -8.5511
15 6 1.6169 2.0414 1.2845
16 6 2.1935 1.2927 2.4892
17 8 3.6124 1.1908 2.3526
18 6 4.0368 0.4702 1.1939
19 6 3.5361 1.1869 -0.0628
20 1 -0.3633 0.4638 0.9172
21 1 -0.3633 0.5625 -0.8601
22 1 -0.3634 -1.0260 -0.0569
23 1 1.9661 3.0784 -1.2228
24 1 0.4237 2.1924 -1.1562
25 1 2.8684 1.2945 -2.5379
26 1 0.1899 2.0262 -3.5269
27 1 1.6408 3.0430 -3.6965
28 1 0.1537 3.0439 -7.0658
29 1 2.0178 3.0547 1.2611
30 1 0.5305 2.0802 1.3641
31 1 1.7602 0.2937 2.5361
32 1 1.9544 1.8359 3.4034
33 1 3.6275 -0.5396 1.2237
34 1 5.1254 0.4208 1.1749
35 1 3.8211 0.6153 -0.9461
36 1 3.9770 2.1825 -0.1155
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308536690.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:24
Heat of formation + Delta-G solvation = -96.237585 kcal
Electronic energy + Delta-G solvation = -16891.353296 eV
Core-core repulsion = 14182.466342 eV
Total energy + Delta-G solvation = -2708.886955 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.02695 -37.16502 -34.95030 -32.82516 -31.72258 -31.13120 -27.71084 -26.50289
-25.21946 -23.48844 -22.20707 -21.20528 -19.56132 -16.66558 -16.55192 -15.94315
-15.58488 -15.26884 -15.00826 -14.58318 -14.46686 -13.87736 -13.37753 -12.71450
-12.63219 -12.58376 -12.17840 -12.00455 -11.54845 -11.34908 -11.24813 -11.12066
-10.73851 -10.70075 -10.33743 -10.12818 -9.97710 -9.55896 -9.29843 -8.90297
-8.49826 -7.27723 -6.04785 -4.06548 3.30268 3.37501 3.43090 3.91207
4.03727 4.42271 4.72648 4.85841 4.94727 5.06243 5.27670 5.31401
5.43870 5.49267 5.58357 5.64019 5.68637 5.74794 5.77659 5.87289
5.98977 6.00513 6.10255 6.19283 6.27195 6.37760 7.19922 7.23348
7.37964 7.55585 7.77683 8.10556 8.37084 8.59382 9.03306 9.58642
11.06446
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.045936 B = 0.005734 C = 0.005572
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 609.402935 B = 4882.111046 C = 5024.012319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.362 6.362
3 C 0.122 3.878
4 C 0.036 3.964
5 N -0.678 5.678
6 C 0.194 3.806
7 C -0.512 4.512
8 H 0.063 0.937
9 C 0.055 3.945
10 N -0.899 5.899
11 Si 0.899 3.101
12 H -0.272 1.272
13 H -0.284 1.284
14 H -0.285 1.285
15 C -0.182 4.182
16 C 0.069 3.931
17 O -0.388 6.388
18 C 0.065 3.935
19 C -0.141 4.141
20 H 0.030 0.970
21 H 0.054 0.946
22 H 0.079 0.921
23 H 0.025 0.975
24 H 0.068 0.932
25 H 0.329 0.671
26 H 0.025 0.975
27 H -0.016 1.016
28 H 0.261 0.739
29 H 0.078 0.922
30 H 0.076 0.924
31 H 0.054 0.946
32 H 0.088 0.912
33 H 0.059 0.941
34 H 0.090 0.910
35 H 0.090 0.910
36 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.725 -2.310 15.330 15.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.281 6.281
3 C 0.082 3.918
4 C -0.095 4.095
5 N -0.309 5.309
6 C 0.067 3.933
7 C -0.550 4.550
8 H 0.081 0.919
9 C -0.146 4.146
10 N -0.539 5.539
11 Si 0.727 3.273
12 H -0.196 1.196
13 H -0.210 1.210
14 H -0.211 1.211
15 C -0.220 4.220
16 C -0.008 4.008
17 O -0.307 6.307
18 C -0.012 4.012
19 C -0.179 4.179
20 H 0.048 0.952
21 H 0.073 0.927
22 H 0.097 0.903
23 H 0.043 0.957
24 H 0.087 0.913
25 H 0.146 0.854
26 H 0.044 0.956
27 H 0.002 0.998
28 H 0.070 0.930
29 H 0.097 0.903
30 H 0.094 0.906
31 H 0.072 0.928
32 H 0.106 0.894
33 H 0.077 0.923
34 H 0.108 0.892
35 H 0.108 0.892
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.354 -2.749 15.374 15.794
hybrid contribution 0.147 0.646 -1.307 1.465
sum 2.500 -2.103 14.067 14.442
Atomic orbital electron populations
1.22693 0.81838 1.02352 0.99682 1.87898 1.19259 1.26212 1.94715
1.21465 0.93454 0.84069 0.92782 1.22426 1.00676 0.94693 0.91682
1.60579 1.15550 1.53127 1.01639 1.19558 0.95167 0.92179 0.86357
1.21219 1.31370 1.11817 0.90618 0.91858 1.24998 0.95195 0.95180
0.99256 1.69974 1.35394 1.24086 1.24430 0.86422 0.78288 0.79867
0.82730 1.19610 1.21000 1.21093 1.22774 1.01950 1.00863 0.96449
1.22425 0.81448 0.99749 0.97205 1.87868 1.21794 1.76413 1.44611
1.22532 0.99381 0.94977 0.84269 1.22159 0.93468 1.02356 0.99923
0.95191 0.92724 0.90267 0.95666 0.91332 0.85389 0.95645 0.99787
0.92979 0.90321 0.90559 0.92769 0.89400 0.92299 0.89159 0.89150
0.90286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.44 10.22 101.05 1.03 1.47 16
2 O -0.36 -5.83 9.16 -35.23 -0.32 -6.15 16
3 C 0.12 1.83 0.47 -90.44 -0.04 1.79 16
4 C 0.04 0.64 4.19 -3.83 -0.02 0.62 16
5 N -0.68 -14.60 6.24 -115.07 -0.72 -15.32 16
6 C 0.19 5.12 5.43 -4.98 -0.03 5.09 16
7 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16
8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16
9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
10 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16
11 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16
12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
15 C -0.18 -2.27 4.72 -26.58 -0.13 -2.40 16
16 C 0.07 0.81 6.69 37.21 0.25 1.06 16
17 O -0.39 -5.23 10.77 -35.23 -0.38 -5.61 16
18 C 0.06 0.82 6.69 37.20 0.25 1.07 16
19 C -0.14 -1.97 4.75 -26.60 -0.13 -2.09 16
20 H 0.03 0.35 6.58 -51.93 -0.34 0.01 16
21 H 0.05 0.88 6.23 -51.93 -0.32 0.56 16
22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16
24 H 0.07 1.24 6.48 -51.93 -0.34 0.91 16
25 H 0.33 6.81 7.16 -39.29 -0.28 6.53 16
26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
27 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16
28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.08 0.88 6.53 -51.93 -0.34 0.54 16
31 H 0.05 0.65 7.82 -51.93 -0.41 0.24 16
32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16
33 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16
34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
35 H 0.09 1.33 6.92 -51.93 -0.36 0.97 16
36 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16
LS Contribution 285.06 15.07 4.30 4.30
Total: -1.00 -30.91 285.06 -6.35 -37.27
By element:
Atomic # 1 Polarization: 7.56 SS G_CDS: -5.72 Total: 1.84 kcal
Atomic # 6 Polarization: -7.62 SS G_CDS: 0.78 Total: -6.85 kcal
Atomic # 7 Polarization: -41.61 SS G_CDS: 0.02 Total: -41.59 kcal
Atomic # 8 Polarization: -11.06 SS G_CDS: -0.70 Total: -11.76 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -30.91 -6.35 -37.27 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308536690.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.972 kcal
(2) G-P(sol) polarization free energy of solvation -30.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds