Wall clock time and date at job start Sun Mar 29 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00242 * 2 1 4 4 C 1.52995 * 109.54579 * 302.67612 * 3 2 1 5 5 N 1.46898 * 109.47173 * 301.06545 * 4 3 2 6 6 C 1.46895 * 111.00315 * 173.88362 * 5 4 3 7 7 C 1.50699 * 109.47225 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00457 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99689 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00332 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99593 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47266 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46614 * 120.00236 * 11 9 7 14 14 H 1.48500 * 109.46833 * 239.99841 * 11 9 7 15 15 C 1.53180 * 109.53945 * 62.85215 * 3 2 1 16 16 C 1.53108 * 109.15530 * 63.06270 * 15 3 2 17 17 O 1.42905 * 109.48854 * 57.47507 * 16 15 3 18 18 C 1.42898 * 114.09695 * 298.89050 * 17 16 15 19 19 C 1.53085 * 109.41900 * 61.15234 * 18 17 16 20 20 H 1.09007 * 109.46903 * 296.82329 * 1 2 3 21 21 H 1.09003 * 109.46889 * 56.81635 * 1 2 3 22 22 H 1.08996 * 109.47527 * 176.82326 * 1 2 3 23 23 H 1.08996 * 109.46809 * 181.06816 * 4 3 2 24 24 H 1.09001 * 109.47100 * 61.06743 * 4 3 2 25 25 H 1.00905 * 111.00107 * 297.84095 * 5 4 3 26 26 H 1.09003 * 109.47158 * 300.00308 * 6 5 4 27 27 H 1.08998 * 109.47456 * 59.99802 * 6 5 4 28 28 H 0.97004 * 120.00099 * 179.97438 * 10 9 7 29 29 H 1.08995 * 109.52300 * 182.87898 * 15 3 2 30 30 H 1.08998 * 109.52523 * 303.07343 * 15 3 2 31 31 H 1.08993 * 109.41191 * 297.49182 * 16 15 3 32 32 H 1.09002 * 109.48650 * 177.50822 * 16 15 3 33 33 H 1.09002 * 109.48039 * 301.17191 * 18 17 16 34 34 H 1.08996 * 109.49107 * 181.14688 * 18 17 16 35 35 H 1.09001 * 109.52561 * 182.48234 * 19 18 17 36 36 H 1.09008 * 109.57178 * 62.33492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5074 2.0897 -1.2136 5 7 1.8668 1.3718 -2.4438 6 6 1.2756 2.0187 -3.6227 7 6 1.6648 1.2555 -4.8625 8 1 2.2885 0.3775 -4.7827 9 6 1.2237 1.6777 -6.0988 10 7 0.4638 2.7467 -6.1960 11 14 1.7067 0.7321 -7.6357 12 1 2.5604 -0.4229 -7.2585 13 1 0.4834 0.2406 -8.3193 14 1 2.4597 1.6268 -8.5511 15 6 1.6169 2.0414 1.2845 16 6 2.1935 1.2927 2.4892 17 8 3.6124 1.1908 2.3526 18 6 4.0368 0.4702 1.1939 19 6 3.5361 1.1869 -0.0628 20 1 -0.3633 0.4638 0.9172 21 1 -0.3633 0.5625 -0.8601 22 1 -0.3634 -1.0260 -0.0569 23 1 1.9661 3.0784 -1.2228 24 1 0.4237 2.1924 -1.1562 25 1 2.8684 1.2945 -2.5379 26 1 0.1899 2.0262 -3.5269 27 1 1.6408 3.0430 -3.6965 28 1 0.1537 3.0439 -7.0658 29 1 2.0178 3.0547 1.2611 30 1 0.5305 2.0802 1.3641 31 1 1.7602 0.2937 2.5361 32 1 1.9544 1.8359 3.4034 33 1 3.6275 -0.5396 1.2237 34 1 5.1254 0.4208 1.1749 35 1 3.8211 0.6153 -0.9461 36 1 3.9770 2.1825 -0.1155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308536690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:24 Heat of formation + Delta-G solvation = -119.221991 kcal Electronic energy + Delta-G solvation = -16892.349975 eV Core-core repulsion = 14182.466342 eV Total energy + Delta-G solvation = -2709.883633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16545 -38.31233 -36.69255 -34.67516 -33.22398 -32.14051 -29.50070 -27.64762 -26.89146 -24.63435 -23.75238 -22.86981 -20.72798 -18.69435 -17.66811 -17.18304 -16.90808 -16.61214 -16.31982 -16.20994 -15.65682 -15.33875 -15.03313 -14.48081 -13.81782 -13.70386 -13.62684 -13.33400 -13.19425 -13.01044 -12.66817 -12.58486 -12.35061 -12.17255 -12.04504 -11.48471 -11.32268 -11.21801 -10.69586 -10.61350 -10.19440 -9.10854 -8.25149 -6.36334 1.39948 1.40662 1.54887 2.38345 2.84077 2.97930 3.08347 3.49594 3.68070 3.80101 3.94651 4.08527 4.32150 4.41255 4.46992 4.52061 4.54689 4.61300 4.70125 4.77123 4.80906 4.90746 4.97425 5.04116 5.09302 5.11366 5.21533 5.24003 5.58869 5.98573 6.26417 6.35482 6.40183 6.69519 6.86266 7.34960 8.86751 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.045936 B = 0.005734 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.402935 B = 4882.111046 C = 5024.012319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.125 3.875 4 C 0.036 3.964 5 N -0.676 5.676 6 C 0.210 3.790 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.974 3.026 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.276 1.276 15 C -0.177 4.177 16 C 0.068 3.932 17 O -0.398 6.398 18 C 0.070 3.930 19 C -0.142 4.142 20 H 0.057 0.943 21 H 0.028 0.972 22 H 0.090 0.910 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.334 0.666 26 H -0.003 1.003 27 H -0.041 1.041 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -3.058 16.068 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.085 3.915 4 C -0.094 4.094 5 N -0.307 5.307 6 C 0.082 3.918 7 C -0.572 4.572 8 H 0.081 0.919 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.798 3.202 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.202 1.202 15 C -0.215 4.215 16 C -0.008 4.008 17 O -0.317 6.317 18 C -0.007 4.007 19 C -0.180 4.180 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.109 0.891 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.152 0.848 26 H 0.015 0.985 27 H -0.024 1.024 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.006 -3.501 16.140 16.787 hybrid contribution -0.091 0.907 -1.489 1.746 sum 2.915 -2.594 14.651 15.162 Atomic orbital electron populations 1.22770 0.81058 1.03019 0.99844 1.87880 1.20186 1.26771 1.94770 1.21477 0.94015 0.83599 0.92416 1.22531 1.00444 0.95080 0.91360 1.60452 1.15713 1.53098 1.01390 1.19193 0.93503 0.90989 0.88088 1.21549 1.31722 1.12109 0.91802 0.91858 1.25960 0.94848 0.96052 1.02822 1.70095 1.36262 1.25585 1.25583 0.85266 0.78175 0.78572 0.78167 1.18698 1.20353 1.20181 1.22742 1.02765 1.00748 0.95264 1.22561 0.80623 0.99990 0.97661 1.87864 1.22740 1.76444 1.44651 1.22538 1.00518 0.94301 0.83326 1.22179 0.92793 1.02695 1.00356 0.92505 0.95346 0.89119 0.95509 0.92028 0.84785 0.98464 1.02374 0.92582 0.89920 0.89506 0.92770 0.86923 0.92779 0.87209 0.90307 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.22 113.37 1.16 1.96 16 2 O -0.38 -11.75 9.16 -148.98 -1.37 -13.11 16 3 C 0.12 3.61 0.47 -10.68 -0.01 3.61 16 4 C 0.04 1.29 4.19 86.30 0.36 1.65 16 5 N -0.68 -29.64 6.24 -517.96 -3.23 -32.88 16 6 C 0.21 11.46 5.43 85.56 0.46 11.92 16 7 C -0.53 -30.90 9.32 25.60 0.24 -30.66 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.00 0.07 5.46 84.66 0.46 0.54 16 10 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 11 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 C -0.18 -4.06 4.72 30.69 0.14 -3.92 16 16 C 0.07 1.42 6.69 72.02 0.48 1.90 16 17 O -0.40 -9.75 10.77 -148.98 -1.60 -11.35 16 18 C 0.07 1.63 6.69 72.01 0.48 2.11 16 19 C -0.14 -3.81 4.75 30.68 0.15 -3.66 16 20 H 0.06 1.24 6.58 -2.38 -0.02 1.22 16 21 H 0.03 0.92 6.23 -2.39 -0.01 0.91 16 22 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 2.28 6.48 -2.39 -0.02 2.27 16 25 H 0.33 14.03 7.16 -89.69 -0.64 13.39 16 26 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.80 6.53 -2.39 -0.02 1.79 16 31 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 32 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.32 7.82 -2.39 -0.02 1.30 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.27 6.92 -2.39 -0.02 2.26 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -65.95 285.06 0.46 -65.49 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.41 Total: 16.38 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 3.93 Total: -14.55 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -2.95 Total: -89.52 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -2.97 Total: -24.46 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.95 0.46 -65.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308536690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.732 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds