Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00278 * 2 1 4 4 H 1.48503 * 109.47112 * 240.00127 * 3 2 1 5 5 H 1.48500 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47183 * 120.00011 * 3 2 1 7 7 C 1.37878 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00750 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99609 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46681 * 180.02562 * 9 7 2 11 11 C 1.37763 * 119.99646 * 180.02562 * 10 9 7 12 12 N 1.32742 * 120.93249 * 0.02562 * 11 10 9 13 13 C 1.32259 * 121.34717 * 179.97438 * 12 11 10 14 14 N 1.31233 * 123.07451 * 0.02562 * 13 12 11 15 15 C 1.34104 * 120.58139 * 359.97405 * 14 13 12 16 16 N 1.33326 * 121.80359 * 180.28198 * 15 14 13 17 17 C 1.31371 * 121.21904 * 180.23753 * 16 15 14 18 18 C 1.39071 * 121.80006 * 359.47213 * 17 16 15 19 19 C 1.36935 * 119.86293 * 0.26071 * 18 17 16 20 20 C 1.40093 * 118.00356 * 0.02562 * 19 18 17 21 21 H 0.97001 * 119.99963 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46847 * 60.00403 * 9 7 2 23 23 H 1.08996 * 109.47044 * 299.99627 * 9 7 2 24 24 H 0.96991 * 120.00414 * 359.97438 * 10 9 7 25 25 H 1.08001 * 118.46411 * 179.97438 * 13 12 11 26 26 H 1.07995 * 119.09613 * 179.71157 * 17 16 15 27 27 H 1.08003 * 120.06845 * 180.23842 * 18 17 16 28 28 H 1.07999 * 120.99212 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7438 -4.9115 -0.0011 12 7 0.4428 -5.1753 -0.0021 13 6 -0.0071 -6.4190 -0.0031 14 7 0.7834 -7.4665 -0.0027 15 6 2.1159 -7.3157 -0.0017 16 7 2.9415 -8.3626 -0.0068 17 6 4.2453 -8.2016 -0.0011 18 6 4.8278 -6.9387 -0.0004 19 6 4.0350 -5.8222 -0.0003 20 6 2.6456 -6.0020 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0009 25 1 -1.0750 -6.5801 -0.0035 26 1 4.8822 -9.0738 -0.0008 27 1 5.9032 -6.8388 0.0005 28 1 4.4679 -4.8328 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308872480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 78.008874 kcal Electronic energy + Delta-G solvation = -14841.432628 eV Core-core repulsion = 12278.444232 eV Total energy + Delta-G solvation = -2562.988396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15513 -38.18200 -36.26490 -33.43236 -32.24494 -31.77967 -30.29189 -27.22800 -24.83718 -24.42565 -22.68659 -21.57454 -19.26635 -17.87588 -17.37624 -16.39351 -15.52374 -15.22220 -15.14066 -14.78327 -13.83206 -13.68805 -13.41098 -13.24788 -12.74458 -12.33276 -12.18531 -11.26139 -11.10312 -10.89139 -10.69796 -10.38811 -9.72397 -9.53304 -9.50360 -9.29912 -8.68388 -8.50435 -7.45446 -6.31793 -4.40628 0.58290 0.87211 2.22614 3.15892 3.21155 3.22307 3.25097 3.58346 3.98307 4.21146 4.49446 4.52121 4.68890 4.80729 4.84211 5.04893 5.17902 5.38788 5.62619 5.80485 6.01031 6.32716 6.62951 6.98229 7.17225 7.29397 7.35991 7.64751 7.76770 7.97337 8.25640 8.62707 8.82890 9.25949 10.77840 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.006166 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.877813 B = 4539.804293 C = 5203.536671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.658 5.658 11 C 0.482 3.518 12 N -0.598 5.598 13 C 0.378 3.622 14 N -0.575 5.575 15 C 0.374 3.626 16 N -0.485 5.485 17 C 0.171 3.829 18 C -0.217 4.217 19 C -0.008 4.008 20 C -0.261 4.261 21 H 0.269 0.731 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.404 0.596 25 H 0.195 0.805 26 H 0.162 0.838 27 H 0.139 0.861 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 -9.544 0.010 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.593 4.593 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.281 5.281 11 C 0.223 3.777 12 N -0.329 5.329 13 C 0.085 3.915 14 N -0.299 5.299 15 C 0.129 3.871 16 N -0.195 5.195 17 C -0.003 4.003 18 C -0.239 4.239 19 C -0.037 4.037 20 C -0.273 4.273 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.240 0.760 25 H 0.212 0.788 26 H 0.179 0.821 27 H 0.157 0.843 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.375 -10.211 0.002 12.038 hybrid contribution 2.033 2.057 0.005 2.892 sum 8.409 -8.154 0.007 11.713 Atomic orbital electron populations 1.69944 1.06079 1.27740 1.47959 1.24910 0.94949 0.99456 0.94339 0.86443 0.79454 0.82103 0.78772 1.19991 1.20893 1.19986 1.21129 0.93242 0.90335 1.54551 0.91932 1.19383 0.87923 0.80922 0.98731 1.45626 1.11111 1.02607 1.68792 1.18901 0.88821 0.85901 0.84088 1.68202 1.13216 1.24061 1.27372 1.24683 1.00226 0.81703 0.84901 1.68400 1.01944 1.34395 1.25180 1.19218 0.91204 0.86082 0.90589 1.67673 1.03899 1.32430 1.15547 1.23027 0.90528 0.97036 0.89735 1.21733 1.01365 0.93361 1.07418 1.21234 0.91739 0.99818 0.90889 1.19922 0.95748 0.96644 1.14996 0.92143 0.94443 0.94453 0.75964 0.78813 0.82071 0.84345 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 13.29 55.43 0.74 -23.86 15 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.91 19.94 29.54 -169.99 -5.02 14.92 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.55 -14.14 9.28 -34.44 -0.32 -14.46 15 8 H 0.06 1.49 7.60 -52.49 -0.40 1.09 15 9 C 0.25 6.10 5.48 -5.19 -0.03 6.07 15 10 N -0.66 -12.99 5.61 -61.18 -0.34 -13.33 15 11 C 0.48 9.34 7.55 -155.01 -1.17 8.17 15 12 N -0.60 -12.04 9.68 -13.58 -0.13 -12.17 15 13 C 0.38 6.67 12.21 -92.23 -1.13 5.54 15 14 N -0.57 -10.86 10.50 -14.28 -0.15 -11.01 15 15 C 0.37 6.91 7.67 -157.82 -1.21 5.70 15 16 N -0.48 -8.09 10.44 -12.62 -0.13 -8.22 15 17 C 0.17 2.07 11.14 -17.44 -0.19 1.88 15 18 C -0.22 -2.40 10.03 -39.75 -0.40 -2.80 15 19 C -0.01 -0.11 9.63 -39.36 -0.38 -0.49 15 20 C -0.26 -4.52 5.75 -106.65 -0.61 -5.13 15 21 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 22 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.40 6.85 6.61 -40.82 -0.27 6.58 15 25 H 0.20 2.64 8.06 -52.49 -0.42 2.22 15 26 H 0.16 1.29 8.06 -52.49 -0.42 0.86 15 27 H 0.14 1.02 8.06 -52.48 -0.42 0.60 15 28 H 0.14 1.50 6.66 -52.49 -0.35 1.15 15 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -31.16 254.21 -9.01 -40.17 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.27 Total: 3.49 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -5.54 Total: 6.17 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -0.02 Total: -68.58 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.16 -9.01 -40.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308872480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.178 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds