Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00278 * 2 1 4 4 H 1.48503 * 109.47112 * 240.00127 * 3 2 1 5 5 H 1.48500 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47183 * 120.00011 * 3 2 1 7 7 C 1.37878 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00750 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99609 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46681 * 180.02562 * 9 7 2 11 11 C 1.37763 * 119.99646 * 180.02562 * 10 9 7 12 12 N 1.32742 * 120.93249 * 0.02562 * 11 10 9 13 13 C 1.32259 * 121.34717 * 179.97438 * 12 11 10 14 14 N 1.31233 * 123.07451 * 0.02562 * 13 12 11 15 15 C 1.34104 * 120.58139 * 359.97405 * 14 13 12 16 16 N 1.33326 * 121.80359 * 180.28198 * 15 14 13 17 17 C 1.31371 * 121.21904 * 180.23753 * 16 15 14 18 18 C 1.39071 * 121.80006 * 359.47213 * 17 16 15 19 19 C 1.36935 * 119.86293 * 0.26071 * 18 17 16 20 20 C 1.40093 * 118.00356 * 0.02562 * 19 18 17 21 21 H 0.97001 * 119.99963 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46847 * 60.00403 * 9 7 2 23 23 H 1.08996 * 109.47044 * 299.99627 * 9 7 2 24 24 H 0.96991 * 120.00414 * 359.97438 * 10 9 7 25 25 H 1.08001 * 118.46411 * 179.97438 * 13 12 11 26 26 H 1.07995 * 119.09613 * 179.71157 * 17 16 15 27 27 H 1.08003 * 120.06845 * 180.23842 * 18 17 16 28 28 H 1.07999 * 120.99212 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7438 -4.9115 -0.0011 12 7 0.4428 -5.1753 -0.0021 13 6 -0.0071 -6.4190 -0.0031 14 7 0.7834 -7.4665 -0.0027 15 6 2.1159 -7.3157 -0.0017 16 7 2.9415 -8.3626 -0.0068 17 6 4.2453 -8.2016 -0.0011 18 6 4.8278 -6.9387 -0.0004 19 6 4.0350 -5.8222 -0.0003 20 6 2.6456 -6.0020 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0009 25 1 -1.0750 -6.5801 -0.0035 26 1 4.8822 -9.0738 -0.0008 27 1 5.9032 -6.8388 0.0005 28 1 4.4679 -4.8328 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308872480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 57.653923 kcal Electronic energy + Delta-G solvation = -14842.315285 eV Core-core repulsion = 12278.444232 eV Total energy + Delta-G solvation = -2563.871053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.43686 -39.42978 -37.77951 -35.17867 -33.71847 -33.09134 -31.63939 -29.01506 -26.10834 -25.80608 -24.36182 -22.96964 -20.56088 -19.28635 -18.86802 -17.89771 -16.96936 -16.74954 -16.52459 -16.14305 -15.21761 -15.11983 -15.01024 -14.43631 -14.14665 -13.79699 -13.66746 -12.91600 -12.85130 -12.45317 -12.25164 -11.99173 -11.53785 -10.91652 -10.88448 -10.65154 -10.45627 -9.86856 -8.93590 -8.31003 -6.47557 -0.61153 -0.33179 0.94060 1.43073 1.45840 1.54016 2.07557 2.07851 2.39995 2.81943 3.04420 3.19107 3.24334 3.49211 3.66735 3.85453 4.09628 4.27184 4.52350 4.75907 4.97089 5.07453 5.20600 5.24602 5.45526 5.57033 5.74105 5.80859 6.13351 6.46160 6.66152 6.96616 7.24380 7.44806 8.80110 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.006166 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.877813 B = 4539.804293 C = 5203.536671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.564 4.564 8 H 0.082 0.918 9 C 0.275 3.725 10 N -0.661 5.661 11 C 0.469 3.531 12 N -0.632 5.632 13 C 0.368 3.632 14 N -0.588 5.588 15 C 0.344 3.656 16 N -0.516 5.516 17 C 0.177 3.823 18 C -0.187 4.187 19 C -0.021 4.021 20 C -0.271 4.271 21 H 0.270 0.730 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.417 0.583 25 H 0.224 0.776 26 H 0.210 0.790 27 H 0.191 0.809 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 -10.047 0.012 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.602 4.602 8 H 0.100 0.900 9 C 0.153 3.847 10 N -0.288 5.288 11 C 0.212 3.788 12 N -0.363 5.363 13 C 0.076 3.924 14 N -0.312 5.312 15 C 0.100 3.900 16 N -0.228 5.228 17 C 0.004 3.996 18 C -0.207 4.207 19 C -0.049 4.049 20 C -0.283 4.283 21 H 0.078 0.922 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.256 0.744 25 H 0.240 0.760 26 H 0.227 0.773 27 H 0.208 0.792 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.881 -10.782 0.004 14.624 hybrid contribution 1.081 1.970 0.005 2.247 sum 10.962 -8.812 0.009 14.065 Atomic orbital electron populations 1.70100 1.08022 1.28684 1.49370 1.25937 0.95739 1.03511 0.93789 0.85280 0.78012 0.77003 0.79391 1.18819 1.21124 1.18805 1.21559 0.94285 0.90680 1.53685 0.90041 1.18718 0.88059 0.82585 0.95359 1.45122 1.10864 1.01777 1.71064 1.19121 0.89305 0.86179 0.84208 1.68174 1.14421 1.25496 1.28204 1.25181 1.01444 0.80891 0.84904 1.68395 1.03006 1.34799 1.25003 1.19517 0.91403 0.87190 0.91913 1.67746 1.05835 1.32072 1.17129 1.23973 0.89417 0.99503 0.86662 1.22313 1.03611 0.91734 1.03059 1.21615 0.90115 1.02129 0.91080 1.19976 0.97395 0.95173 1.15714 0.92156 0.98065 0.98074 0.74416 0.76017 0.77336 0.79228 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.17 13.29 21.45 0.28 -52.89 15 2 C 0.01 0.58 5.46 84.66 0.46 1.04 15 3 Si 0.98 40.59 29.54 68.60 2.03 42.62 15 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 5 H -0.29 -11.83 7.11 99.48 0.71 -11.12 15 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 7 C -0.56 -29.05 9.28 25.60 0.24 -28.81 15 8 H 0.08 3.78 7.60 -2.91 -0.02 3.76 15 9 C 0.27 14.01 5.48 85.63 0.47 14.48 15 10 N -0.66 -26.68 5.61 -347.46 -1.95 -28.63 15 11 C 0.47 18.70 7.55 133.97 1.01 19.71 15 12 N -0.63 -26.75 9.68 -196.88 -1.91 -28.65 15 13 C 0.37 13.52 12.21 180.91 2.21 15.73 15 14 N -0.59 -22.65 10.50 -199.09 -2.09 -24.74 15 15 C 0.34 12.60 7.67 135.01 1.04 13.63 15 16 N -0.52 -16.24 10.44 -193.84 -2.02 -18.27 15 17 C 0.18 3.54 11.14 84.96 0.95 4.49 15 18 C -0.19 -3.17 10.03 22.16 0.22 -2.95 15 19 C -0.02 -0.51 9.63 22.41 0.22 -0.30 15 20 C -0.27 -9.23 5.75 -21.18 -0.12 -9.35 15 21 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 22 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 23 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 24 H 0.42 13.92 6.61 -92.71 -0.61 13.31 15 25 H 0.22 6.31 8.06 -2.91 -0.02 6.29 15 26 H 0.21 2.07 8.06 -2.91 -0.02 2.04 15 27 H 0.19 1.37 8.06 -2.91 -0.02 1.34 15 28 H 0.16 2.99 6.66 -2.91 -0.02 2.97 15 Total: -1.00 -71.34 254.21 1.61 -69.72 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.59 Total: 13.17 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 6.69 Total: 27.67 kcal Atomic # 7 Polarization: -145.50 SS G_CDS: -7.69 Total: -153.18 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -71.34 1.61 -69.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308872480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.376 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds