Wall clock time and date at job start Sun Mar 29 2020 21:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48507 * 109.46980 * 269.99623 * 3 2 1 5 5 H 1.48499 * 109.47652 * 29.99729 * 3 2 1 6 6 H 1.48504 * 109.47280 * 150.00225 * 3 2 1 7 7 C 1.37874 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.37722 * 119.99880 * 179.97438 * 10 9 7 12 12 N 1.32774 * 120.98877 * 359.97438 * 11 10 9 13 13 C 1.32272 * 121.58413 * 180.02562 * 12 11 10 14 14 N 1.31377 * 123.01786 * 0.04391 * 13 12 11 15 15 C 1.33722 * 120.29847 * 359.90480 * 14 13 12 16 16 C 1.40352 * 122.96241 * 180.02562 * 15 14 13 17 17 C 1.36336 * 118.60900 * 180.02562 * 16 15 14 18 18 N 1.32534 * 121.91488 * 359.97438 * 17 16 15 19 19 C 1.31531 * 122.66371 * 0.02562 * 18 17 16 20 20 C 1.39724 * 119.75848 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99487 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46931 * 59.99535 * 9 7 2 23 23 H 1.09002 * 109.47438 * 299.99883 * 9 7 2 24 24 H 0.96994 * 119.99951 * 359.97438 * 10 9 7 25 25 H 1.07995 * 118.49371 * 180.02562 * 13 12 11 26 26 H 1.08004 * 120.69484 * 0.06800 * 16 15 14 27 27 H 1.08004 * 119.04462 * 180.02562 * 17 16 15 28 28 H 1.07993 * 120.11883 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7439 -4.9111 0.0011 12 7 0.4429 -5.1762 0.0021 13 6 -0.0110 -6.4186 0.0031 14 7 0.7780 -7.4690 0.0040 15 6 2.1064 -7.3150 0.0021 16 6 3.0005 -8.3967 0.0024 17 6 4.3390 -8.1374 0.0008 18 7 4.8128 -6.8996 -0.0016 19 6 4.0325 -5.8408 -0.0020 20 6 2.6446 -6.0021 -0.0005 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4355 0.0002 25 1 -1.0793 -6.5768 0.0035 26 1 2.6360 -9.4134 0.0032 27 1 5.0334 -8.9646 0.0006 28 1 4.4630 -4.8504 -0.0035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308874437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:31 Heat of formation + Delta-G solvation = 71.925165 kcal Electronic energy + Delta-G solvation = -14833.574927 eV Core-core repulsion = 12270.322721 eV Total energy + Delta-G solvation = -2563.252205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19208 -38.29759 -36.33093 -33.33200 -32.39052 -31.30967 -30.50634 -27.25597 -24.86353 -24.42930 -22.69631 -21.65325 -19.16823 -17.69989 -17.42672 -16.47357 -15.52557 -15.08960 -15.06445 -14.89840 -14.21039 -13.78605 -13.37090 -13.30928 -12.66127 -12.24444 -12.12726 -11.25414 -11.05913 -11.01422 -10.84244 -10.38821 -9.67379 -9.57180 -9.39940 -9.07670 -8.73395 -8.64069 -7.48702 -6.31519 -4.40068 0.54065 0.94591 2.17146 3.16399 3.23015 3.24836 3.35766 3.55895 4.21933 4.32526 4.39357 4.40268 4.58762 4.75553 4.88623 5.05542 5.30281 5.44489 5.70204 5.75123 5.90325 6.43818 6.64258 6.95023 7.21373 7.28230 7.36500 7.73829 7.76743 7.97002 8.15011 8.59477 8.75895 9.26715 10.78158 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.006175 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.265458 B = 4533.456656 C = 5203.577560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.655 5.655 11 C 0.487 3.513 12 N -0.598 5.598 13 C 0.373 3.627 14 N -0.587 5.587 15 C 0.225 3.775 16 C -0.174 4.174 17 C 0.113 3.887 18 N -0.514 5.514 19 C 0.186 3.814 20 C -0.272 4.272 21 H 0.268 0.732 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.405 0.595 25 H 0.192 0.808 26 H 0.143 0.857 27 H 0.156 0.844 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -11.302 0.000 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.278 5.278 11 C 0.228 3.772 12 N -0.328 5.328 13 C 0.081 3.919 14 N -0.311 5.311 15 C 0.092 3.908 16 C -0.196 4.196 17 C -0.034 4.034 18 N -0.225 5.225 19 C 0.015 3.985 20 C -0.284 4.284 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.242 0.758 25 H 0.208 0.792 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.728 -11.157 0.005 12.118 hybrid contribution 0.582 1.049 -0.010 1.199 sum 5.310 -10.109 -0.004 11.419 Atomic orbital electron populations 1.69961 1.06089 1.27618 1.48130 1.24913 0.94949 0.99493 0.94324 0.86379 0.79647 0.82365 0.78361 1.20334 1.20869 1.19653 1.21171 0.93362 0.90265 1.54359 0.91752 1.19405 0.87923 0.80962 0.98750 1.45647 1.11257 1.02585 1.68302 1.18808 0.88828 0.85891 0.83717 1.68162 1.13350 1.24093 1.27187 1.24720 1.00389 0.82163 0.84619 1.68808 1.02576 1.34081 1.25605 1.18770 0.91350 0.90795 0.89878 1.21482 0.93177 0.99119 1.05859 1.22292 0.93492 0.94169 0.93426 1.67606 1.40130 0.98954 1.15785 1.22817 0.88215 0.98018 0.89405 1.19999 0.96772 0.95899 1.15759 0.92225 0.94423 0.94403 0.75764 0.79171 0.83952 0.82689 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 13.29 55.43 0.74 -23.80 15 2 C 0.07 1.78 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 19.99 29.54 -169.99 -5.02 14.97 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.55 -14.07 9.28 -34.44 -0.32 -14.39 15 8 H 0.06 1.53 7.60 -52.49 -0.40 1.14 15 9 C 0.25 6.02 5.48 -5.19 -0.03 5.99 15 10 N -0.66 -12.77 5.62 -61.19 -0.34 -13.12 15 11 C 0.49 9.23 7.55 -155.04 -1.17 8.06 15 12 N -0.60 -11.71 9.67 -13.56 -0.13 -11.84 15 13 C 0.37 6.24 12.22 -92.10 -1.13 5.12 15 14 N -0.59 -9.97 10.47 -12.59 -0.13 -10.10 15 15 C 0.22 3.75 6.64 -84.85 -0.56 3.19 15 16 C -0.17 -2.37 10.10 -39.47 -0.40 -2.77 15 17 C 0.11 1.43 11.07 -17.93 -0.20 1.23 15 18 N -0.51 -7.48 10.31 -13.25 -0.14 -7.62 15 19 C 0.19 2.77 10.80 -17.13 -0.19 2.59 15 20 C -0.27 -4.62 5.76 -106.71 -0.61 -5.23 15 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 22 H 0.04 1.00 8.14 -51.92 -0.42 0.58 15 23 H 0.04 1.01 8.14 -51.93 -0.42 0.58 15 24 H 0.41 6.83 6.66 -40.82 -0.27 6.56 15 25 H 0.19 2.46 8.06 -52.49 -0.42 2.04 15 26 H 0.14 1.61 8.06 -52.48 -0.42 1.18 15 27 H 0.16 1.39 8.06 -52.48 -0.42 0.96 15 28 H 0.16 1.98 6.66 -52.49 -0.35 1.63 15 LS Contribution 254.27 15.07 3.83 3.83 Total: -1.00 -29.67 254.27 -8.17 -37.83 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.27 Total: 4.38 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -4.70 Total: 5.45 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.01 Total: -66.47 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.67 -8.17 -37.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308874437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.760 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds