Wall clock time and date at job start Sun Mar 29 2020 21:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48507 * 109.46980 * 269.99623 * 3 2 1 5 5 H 1.48499 * 109.47652 * 29.99729 * 3 2 1 6 6 H 1.48504 * 109.47280 * 150.00225 * 3 2 1 7 7 C 1.37874 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.37722 * 119.99880 * 179.97438 * 10 9 7 12 12 N 1.32774 * 120.98877 * 359.97438 * 11 10 9 13 13 C 1.32272 * 121.58413 * 180.02562 * 12 11 10 14 14 N 1.31377 * 123.01786 * 0.04391 * 13 12 11 15 15 C 1.33722 * 120.29847 * 359.90480 * 14 13 12 16 16 C 1.40352 * 122.96241 * 180.02562 * 15 14 13 17 17 C 1.36336 * 118.60900 * 180.02562 * 16 15 14 18 18 N 1.32534 * 121.91488 * 359.97438 * 17 16 15 19 19 C 1.31531 * 122.66371 * 0.02562 * 18 17 16 20 20 C 1.39724 * 119.75848 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99487 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46931 * 59.99535 * 9 7 2 23 23 H 1.09002 * 109.47438 * 299.99883 * 9 7 2 24 24 H 0.96994 * 119.99951 * 359.97438 * 10 9 7 25 25 H 1.07995 * 118.49371 * 180.02562 * 13 12 11 26 26 H 1.08004 * 120.69484 * 0.06800 * 16 15 14 27 27 H 1.08004 * 119.04462 * 180.02562 * 17 16 15 28 28 H 1.07993 * 120.11883 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7439 -4.9111 0.0011 12 7 0.4429 -5.1762 0.0021 13 6 -0.0110 -6.4186 0.0031 14 7 0.7780 -7.4690 0.0040 15 6 2.1064 -7.3150 0.0021 16 6 3.0005 -8.3967 0.0024 17 6 4.3390 -8.1374 0.0008 18 7 4.8128 -6.8996 -0.0016 19 6 4.0325 -5.8408 -0.0020 20 6 2.6446 -6.0021 -0.0005 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4355 0.0002 25 1 -1.0793 -6.5768 0.0035 26 1 2.6360 -9.4134 0.0032 27 1 5.0334 -8.9646 0.0006 28 1 4.4630 -4.8504 -0.0035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308874437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:31 Heat of formation + Delta-G solvation = 52.783254 kcal Electronic energy + Delta-G solvation = -14834.404982 eV Core-core repulsion = 12270.322721 eV Total energy + Delta-G solvation = -2564.082261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.46801 -39.53159 -37.84195 -35.12255 -33.84444 -32.64214 -31.80504 -29.05250 -26.14605 -25.83772 -24.34951 -23.05013 -20.46827 -19.16574 -18.86038 -18.02344 -16.98211 -16.69943 -16.43892 -16.19320 -15.51643 -15.08435 -14.91091 -14.74225 -14.13018 -14.06433 -13.26255 -12.91606 -12.85167 -12.45578 -12.36856 -12.18735 -11.49115 -11.03727 -10.72643 -10.57782 -10.16207 -10.11815 -8.95018 -8.30864 -6.46687 -0.68888 -0.29785 0.86860 1.44006 1.44752 1.55719 2.06706 2.16469 2.40140 3.04752 3.11772 3.14834 3.25180 3.36497 3.54404 3.67856 4.06110 4.31807 4.61094 4.63653 4.82059 5.00285 5.25172 5.25697 5.47381 5.56448 5.73491 5.82884 6.14348 6.53157 6.75764 6.84673 7.24169 7.36310 8.80355 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.006175 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.265458 B = 4533.456656 C = 5203.577560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.274 3.726 10 N -0.659 5.659 11 C 0.478 3.522 12 N -0.633 5.633 13 C 0.364 3.636 14 N -0.586 5.586 15 C 0.198 3.802 16 C -0.171 4.171 17 C 0.122 3.878 18 N -0.518 5.518 19 C 0.184 3.816 20 C -0.281 4.281 21 H 0.269 0.731 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.417 0.583 25 H 0.221 0.779 26 H 0.168 0.832 27 H 0.199 0.801 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -12.387 0.007 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.601 4.601 8 H 0.099 0.901 9 C 0.152 3.848 10 N -0.286 5.286 11 C 0.220 3.780 12 N -0.364 5.364 13 C 0.073 3.927 14 N -0.308 5.308 15 C 0.066 3.934 16 C -0.193 4.193 17 C -0.025 4.025 18 N -0.228 5.228 19 C 0.013 3.987 20 C -0.292 4.292 21 H 0.078 0.922 22 H 0.021 0.979 23 H 0.022 0.978 24 H 0.256 0.744 25 H 0.237 0.763 26 H 0.186 0.814 27 H 0.216 0.784 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.882 -12.319 0.012 14.111 hybrid contribution -0.046 1.162 -0.013 1.163 sum 6.836 -11.157 -0.001 13.085 Atomic orbital electron populations 1.70103 1.07934 1.28579 1.49497 1.25903 0.95734 1.03409 0.93829 0.85251 0.78561 0.77493 0.78522 1.19762 1.20962 1.18223 1.21595 0.94315 0.90735 1.53492 0.90100 1.18743 0.88013 0.82486 0.95535 1.45179 1.10996 1.01935 1.70449 1.18992 0.89335 0.86008 0.83709 1.68151 1.14248 1.25787 1.28172 1.25284 1.01778 0.81355 0.84294 1.68859 1.03041 1.33915 1.25012 1.19298 0.91745 0.91728 0.90626 1.21812 0.93110 0.99421 1.04908 1.22995 0.93953 0.94537 0.91020 1.67725 1.40094 0.99614 1.15350 1.23098 0.87347 0.99233 0.89016 1.20059 0.97471 0.95278 1.16439 0.92175 0.97852 0.97825 0.74357 0.76255 0.81415 0.78382 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.82 13.29 21.45 0.28 -52.54 15 2 C 0.01 0.63 5.46 84.65 0.46 1.09 15 3 Si 0.98 40.84 29.54 68.60 2.03 42.87 15 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 7 C -0.56 -28.98 9.28 25.60 0.24 -28.74 15 8 H 0.08 3.79 7.60 -2.91 -0.02 3.77 15 9 C 0.27 13.80 5.48 85.63 0.47 14.27 15 10 N -0.66 -26.31 5.62 -347.51 -1.95 -28.27 15 11 C 0.48 18.45 7.55 133.97 1.01 19.46 15 12 N -0.63 -25.54 9.67 -196.81 -1.90 -27.45 15 13 C 0.36 12.22 12.22 180.86 2.21 14.43 15 14 N -0.59 -19.36 10.47 -193.76 -2.03 -21.39 15 15 C 0.20 6.32 6.64 40.27 0.27 6.59 15 16 C -0.17 -4.13 10.10 22.34 0.23 -3.90 15 17 C 0.12 2.60 11.07 84.14 0.93 3.53 15 18 N -0.52 -13.52 10.31 -195.85 -2.02 -15.54 15 19 C 0.18 5.16 10.80 85.10 0.92 6.08 15 20 C -0.28 -9.33 5.76 -21.22 -0.12 -9.46 15 21 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 22 H 0.00 0.20 8.14 -2.38 -0.02 0.18 15 23 H 0.00 0.21 8.14 -2.39 -0.02 0.19 15 24 H 0.42 14.05 6.66 -92.71 -0.62 13.43 15 25 H 0.22 5.63 8.06 -2.91 -0.02 5.60 15 26 H 0.17 3.14 8.06 -2.91 -0.02 3.12 15 27 H 0.20 2.48 8.06 -2.91 -0.02 2.45 15 28 H 0.18 4.13 6.66 -2.91 -0.02 4.11 15 Total: -1.00 -64.90 254.27 1.60 -63.30 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.58 Total: 15.67 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 6.61 Total: 23.35 kcal Atomic # 7 Polarization: -137.56 SS G_CDS: -7.62 Total: -145.18 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -64.90 1.60 -63.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308874437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.082 kcal (2) G-P(sol) polarization free energy of solvation -64.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds