Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00146 * 3 2 1 5 5 H 1.48502 * 109.47262 * 30.00405 * 3 2 1 6 6 H 1.48506 * 109.46999 * 150.00078 * 3 2 1 7 7 C 1.37875 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00652 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99567 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38521 * 119.99875 * 180.02562 * 10 9 7 12 12 C 1.40385 * 119.24529 * 0.02562 * 11 10 9 13 13 C 1.36117 * 119.84869 * 179.97438 * 12 11 10 14 14 C 1.41177 * 118.33401 * 359.97438 * 13 12 11 15 15 N 1.33484 * 121.07457 * 180.02562 * 14 13 12 16 16 C 1.31441 * 119.71744 * 179.97438 * 15 14 13 17 17 C 1.39518 * 120.59089 * 0.28229 * 16 15 14 18 18 N 1.31433 * 120.75037 * 359.44380 * 17 16 15 19 19 C 1.33836 * 119.78870 * 0.52797 * 18 17 16 20 20 N 1.31735 * 119.24058 * 179.97438 * 11 10 9 21 21 H 0.96995 * 119.99916 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47267 * 60.00557 * 9 7 2 23 23 H 1.08995 * 109.47301 * 300.00267 * 9 7 2 24 24 H 0.97002 * 120.00232 * 359.97438 * 10 9 7 25 25 H 1.07999 * 120.07473 * 359.95345 * 12 11 10 26 26 H 1.08001 * 120.83536 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.70162 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.62984 * 179.71842 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 5.3618 -2.8283 -0.0024 12 6 6.2599 -1.7493 -0.0009 13 6 7.6007 -1.9839 -0.0005 14 6 8.0466 -3.3234 -0.0011 15 7 9.3490 -3.6160 -0.0002 16 6 9.7344 -4.8727 -0.0003 17 6 8.7945 -5.9037 -0.0071 18 7 7.5070 -5.6393 -0.0027 19 6 7.0893 -4.3678 -0.0022 20 7 5.7845 -4.0760 -0.0029 21 1 -0.4850 0.8400 0.0004 22 1 3.8753 -0.6805 0.8889 23 1 3.8746 -0.6800 -0.8910 24 1 3.3696 -3.3125 -0.0021 25 1 5.8878 -0.7354 -0.0005 26 1 8.3058 -1.1658 0.0002 27 1 10.7882 -5.1091 0.0000 28 1 9.1285 -6.9307 -0.0116 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308887714.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = 87.180430 kcal Electronic energy + Delta-G solvation = -14687.697285 eV Core-core repulsion = 12125.106598 eV Total energy + Delta-G solvation = -2562.590687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31037 -38.61333 -35.19626 -34.73918 -32.70800 -31.69938 -30.09834 -27.72618 -25.07660 -24.10676 -22.49258 -22.04259 -18.87428 -18.35146 -17.41324 -16.98355 -15.66916 -15.31602 -15.16309 -14.57787 -14.20767 -13.82095 -13.62855 -13.18807 -12.71150 -12.34129 -12.25041 -11.69402 -11.50740 -11.13239 -10.99567 -10.31988 -10.13512 -9.72217 -9.68186 -9.19330 -8.86602 -8.48340 -7.42187 -6.36095 -4.40879 0.34324 0.74888 2.13046 3.00978 3.10422 3.16476 3.18255 3.39905 4.13955 4.15653 4.23221 4.30932 4.36313 4.79727 4.96785 5.00392 5.02614 5.25561 5.60521 5.75336 5.91125 6.06475 6.25499 6.59235 6.67868 7.06924 7.11098 7.40605 7.77997 7.99170 8.24098 8.47781 8.65833 9.19757 10.75940 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.059723 B = 0.005576 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.714671 B = 5020.319268 C = 5473.889257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.670 5.670 11 C 0.455 3.545 12 C -0.191 4.191 13 C -0.007 4.007 14 C -0.028 4.028 15 N -0.400 5.400 16 C 0.018 3.982 17 C 0.110 3.890 18 N -0.443 5.443 19 C 0.327 3.673 20 N -0.556 5.556 21 H 0.270 0.730 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.410 0.590 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.004 -4.291 0.005 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.101 0.899 9 C 0.095 3.905 10 N -0.295 5.295 11 C 0.200 3.800 12 C -0.216 4.216 13 C -0.033 4.033 14 C -0.161 4.161 15 N -0.114 5.114 16 C -0.157 4.157 17 C -0.067 4.067 18 N -0.160 5.160 19 C 0.083 3.917 20 N -0.282 5.282 21 H 0.080 0.920 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.247 0.753 25 H 0.167 0.833 26 H 0.166 0.834 27 H 0.186 0.814 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 15.943 -4.460 0.009 16.555 hybrid contribution 0.665 1.192 -0.015 1.365 sum 16.608 -3.268 -0.006 16.927 Atomic orbital electron populations 1.69867 1.06236 1.27643 1.48403 1.24804 0.94848 0.99098 0.93802 0.86823 0.80384 0.83379 0.79008 1.19668 1.20612 1.18746 1.20969 0.87914 0.95621 1.54074 0.89871 1.19802 0.96645 0.77508 0.96518 1.45342 1.01312 1.11146 1.71683 1.18753 0.87112 0.87978 0.86141 1.21682 0.93088 1.00682 1.06186 1.21008 0.95212 0.94533 0.92543 1.20101 0.90781 0.95913 1.09281 1.68347 1.15797 1.21364 1.05898 1.23716 1.01556 0.88792 1.01595 1.23996 0.88534 1.01399 0.92810 1.68288 1.16615 1.19383 1.11679 1.19536 0.89306 0.89328 0.93567 1.67058 1.14482 1.19203 1.27411 0.91984 0.95328 0.95791 0.75312 0.83298 0.83431 0.81383 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.96 55.43 0.77 -24.46 15 2 C 0.08 2.10 5.47 -17.82 -0.10 2.01 15 3 Si 0.88 19.28 27.47 -169.99 -4.67 14.61 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.26 -5.37 6.54 56.52 0.37 -5.00 15 7 C -0.55 -14.17 9.83 -34.44 -0.34 -14.50 15 8 H 0.08 2.33 7.84 -52.49 -0.41 1.92 15 9 C 0.22 4.65 3.69 -5.19 -0.02 4.64 15 10 N -0.67 -13.27 5.70 -61.54 -0.35 -13.62 15 11 C 0.46 8.52 7.63 -155.58 -1.19 7.33 15 12 C -0.19 -3.04 9.23 -39.54 -0.36 -3.41 15 13 C -0.01 -0.10 10.10 -39.23 -0.40 -0.50 15 14 C -0.03 -0.45 6.60 -84.72 -0.56 -1.01 15 15 N -0.40 -5.74 10.46 -10.75 -0.11 -5.85 15 16 C 0.02 0.20 11.21 -17.24 -0.19 0.01 15 17 C 0.11 1.28 11.21 -17.25 -0.19 1.09 15 18 N -0.44 -7.38 10.55 -12.47 -0.13 -7.51 15 19 C 0.33 5.99 7.60 -157.71 -1.20 4.79 15 20 N -0.56 -10.99 10.45 -11.81 -0.12 -11.12 15 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.03 0.61 6.95 -51.93 -0.36 0.24 15 23 H 0.02 0.50 7.32 -51.93 -0.38 0.12 15 24 H 0.41 8.17 8.44 -40.82 -0.34 7.82 15 25 H 0.15 2.16 6.62 -52.49 -0.35 1.81 15 26 H 0.15 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.17 1.12 8.06 -52.49 -0.42 0.69 15 28 H 0.17 1.20 8.06 -52.49 -0.42 0.77 15 LS Contribution 251.56 15.07 3.79 3.79 Total: -1.00 -30.83 251.56 -7.65 -38.48 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -2.28 Total: 5.24 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.55 Total: 0.44 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.06 Total: -62.56 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.67 Total: 14.61 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.83 -7.65 -38.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308887714.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.661 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds