Wall clock time and date at job start Sun Mar 29 2020 21:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00146 * 3 2 1 5 5 H 1.48502 * 109.47262 * 30.00405 * 3 2 1 6 6 H 1.48506 * 109.46999 * 150.00078 * 3 2 1 7 7 C 1.37875 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00652 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99567 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38521 * 119.99875 * 180.02562 * 10 9 7 12 12 C 1.40385 * 119.24529 * 0.02562 * 11 10 9 13 13 C 1.36117 * 119.84869 * 179.97438 * 12 11 10 14 14 C 1.41177 * 118.33401 * 359.97438 * 13 12 11 15 15 N 1.33484 * 121.07457 * 180.02562 * 14 13 12 16 16 C 1.31441 * 119.71744 * 179.97438 * 15 14 13 17 17 C 1.39518 * 120.59089 * 0.28229 * 16 15 14 18 18 N 1.31433 * 120.75037 * 359.44380 * 17 16 15 19 19 C 1.33836 * 119.78870 * 0.52797 * 18 17 16 20 20 N 1.31735 * 119.24058 * 179.97438 * 11 10 9 21 21 H 0.96995 * 119.99916 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47267 * 60.00557 * 9 7 2 23 23 H 1.08995 * 109.47301 * 300.00267 * 9 7 2 24 24 H 0.97002 * 120.00232 * 359.97438 * 10 9 7 25 25 H 1.07999 * 120.07473 * 359.95345 * 12 11 10 26 26 H 1.08001 * 120.83536 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.70162 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.62984 * 179.71842 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 5.3618 -2.8283 -0.0024 12 6 6.2599 -1.7493 -0.0009 13 6 7.6007 -1.9839 -0.0005 14 6 8.0466 -3.3234 -0.0011 15 7 9.3490 -3.6160 -0.0002 16 6 9.7344 -4.8727 -0.0003 17 6 8.7945 -5.9037 -0.0071 18 7 7.5070 -5.6393 -0.0027 19 6 7.0893 -4.3678 -0.0022 20 7 5.7845 -4.0760 -0.0029 21 1 -0.4850 0.8400 0.0004 22 1 3.8753 -0.6805 0.8889 23 1 3.8746 -0.6800 -0.8910 24 1 3.3696 -3.3125 -0.0021 25 1 5.8878 -0.7354 -0.0005 26 1 8.3058 -1.1658 0.0002 27 1 10.7882 -5.1091 0.0000 28 1 9.1285 -6.9307 -0.0116 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308887714.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:23 Heat of formation + Delta-G solvation = 64.134954 kcal Electronic energy + Delta-G solvation = -14688.696612 eV Core-core repulsion = 12125.106598 eV Total energy + Delta-G solvation = -2563.590014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.45505 -39.85422 -36.68034 -35.86530 -34.58585 -32.91534 -31.40811 -29.35357 -26.20287 -25.46746 -23.73659 -23.63568 -20.07496 -19.79361 -18.73774 -18.43833 -17.04652 -16.64730 -16.54470 -15.94223 -15.28596 -15.25190 -15.11192 -14.44489 -14.37750 -13.73276 -13.45895 -12.94355 -12.85943 -12.63864 -12.60939 -11.88607 -11.71480 -11.43863 -11.07223 -10.78722 -10.36901 -9.63907 -8.79397 -8.37952 -6.48702 -0.74274 -0.38534 0.98063 1.39675 1.41410 1.51493 1.88772 2.05647 2.31248 2.97102 2.99513 3.13010 3.17322 3.27986 3.69645 3.95089 4.05869 4.28480 4.49942 4.57701 4.73532 4.79426 4.99466 5.02274 5.24148 5.50298 5.68927 6.04271 6.30786 6.48424 6.65905 6.71271 7.13777 7.23609 8.77830 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.059723 B = 0.005576 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.714671 B = 5020.319268 C = 5473.889257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.231 1.231 7 C -0.558 4.558 8 H 0.040 0.960 9 C 0.233 3.767 10 N -0.688 5.688 11 C 0.440 3.560 12 C -0.204 4.204 13 C 0.008 3.992 14 C -0.043 4.043 15 N -0.415 5.415 16 C 0.044 3.956 17 C 0.124 3.876 18 N -0.483 5.483 19 C 0.292 3.708 20 N -0.588 5.588 21 H 0.272 0.728 22 H 0.040 0.960 23 H 0.038 0.962 24 H 0.402 0.598 25 H 0.165 0.835 26 H 0.183 0.817 27 H 0.224 0.776 28 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.440 -3.855 0.023 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.154 1.154 7 C -0.595 4.595 8 H 0.059 0.941 9 C 0.110 3.890 10 N -0.315 5.315 11 C 0.187 3.813 12 C -0.229 4.229 13 C -0.017 4.017 14 C -0.174 4.174 15 N -0.129 5.129 16 C -0.132 4.132 17 C -0.054 4.054 18 N -0.201 5.201 19 C 0.049 3.951 20 N -0.314 5.314 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.237 0.763 25 H 0.182 0.818 26 H 0.200 0.800 27 H 0.240 0.760 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 20.414 -4.027 0.028 20.808 hybrid contribution -0.460 0.695 -0.024 0.834 sum 19.954 -3.332 0.004 20.230 Atomic orbital electron populations 1.70033 1.08480 1.28863 1.50419 1.25853 0.95688 1.03594 0.93144 0.85679 0.79997 0.77408 0.79752 1.18600 1.20858 1.15419 1.21264 0.90593 0.94211 1.53467 0.94133 1.19515 0.93364 0.78769 0.97365 1.45110 1.02035 1.10065 1.74248 1.18905 0.86657 0.88750 0.86953 1.21760 0.93293 1.00394 1.07418 1.21372 0.95133 0.94975 0.90258 1.20251 0.91375 0.96101 1.09633 1.68478 1.14338 1.23067 1.07046 1.24715 1.03950 0.87493 0.97065 1.24962 0.86921 1.04096 0.89418 1.68290 1.19398 1.19122 1.13264 1.19782 0.89181 0.90728 0.95384 1.66900 1.16266 1.20304 1.27893 0.91883 0.94250 0.94433 0.76338 0.81790 0.79979 0.75973 0.76139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.75 13.96 21.45 0.30 -55.46 15 2 C 0.02 0.91 5.47 84.65 0.46 1.37 15 3 Si 0.95 39.28 27.47 68.60 1.88 41.16 15 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.23 -8.34 6.54 99.48 0.65 -7.69 15 7 C -0.56 -30.00 9.83 25.60 0.25 -29.75 15 8 H 0.04 2.45 7.84 -2.91 -0.02 2.42 15 9 C 0.23 10.00 3.69 85.63 0.32 10.32 15 10 N -0.69 -28.36 5.70 -348.62 -1.99 -30.34 15 11 C 0.44 16.76 7.63 133.73 1.02 17.78 15 12 C -0.20 -6.26 9.23 22.30 0.21 -6.05 15 13 C 0.01 0.23 10.10 22.50 0.23 0.45 15 14 C -0.04 -1.33 6.60 40.46 0.27 -1.06 15 15 N -0.41 -10.36 10.46 -187.92 -1.97 -12.33 15 16 C 0.04 0.75 11.21 85.06 0.95 1.71 15 17 C 0.12 2.38 11.21 85.06 0.95 3.33 15 18 N -0.48 -15.40 10.55 -193.35 -2.04 -17.44 15 19 C 0.29 10.54 7.60 134.98 1.03 11.56 15 20 N -0.59 -23.89 10.45 -191.27 -2.00 -25.88 15 21 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 22 H 0.04 1.61 6.95 -2.39 -0.02 1.59 15 23 H 0.04 1.52 7.32 -2.39 -0.02 1.50 15 24 H 0.40 17.29 8.44 -92.71 -0.78 16.51 15 25 H 0.16 4.40 6.62 -2.91 -0.02 4.38 15 26 H 0.18 3.49 8.06 -2.91 -0.02 3.46 15 27 H 0.22 1.31 8.06 -2.91 -0.02 1.29 15 28 H 0.22 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -72.06 251.56 0.24 -71.82 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.37 Total: 18.81 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.68 Total: 9.66 kcal Atomic # 7 Polarization: -133.76 SS G_CDS: -7.69 Total: -141.45 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.88 Total: 41.16 kcal Total: -72.06 0.24 -71.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308887714.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.952 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds