Wall clock time and date at job start Sun Mar 29 2020 21:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50701 * 109.47172 * 64.26351 * 3 2 1 5 5 O 1.21291 * 119.99855 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99885 * 179.97438 * 4 3 2 7 7 C 1.39939 * 119.99616 * 174.89043 * 6 4 3 8 8 C 1.39297 * 119.94622 * 145.78561 * 7 6 4 9 9 C 1.38488 * 120.43160 * 180.02562 * 8 7 6 10 10 C 1.37679 * 120.31809 * 359.97438 * 9 8 7 11 11 C 1.40742 * 119.88630 * 0.02562 * 10 9 8 12 12 C 1.41417 * 120.20493 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99574 * 205.17768 * 12 11 10 14 14 C 1.39924 * 120.00105 * 25.18097 * 12 11 10 15 15 N 1.30829 * 120.00369 * 16.79157 * 14 12 11 16 16 Si 1.86807 * 119.99980 * 196.78866 * 14 12 11 17 17 H 1.48499 * 109.46932 * 89.99881 * 16 14 12 18 18 H 1.48495 * 109.47105 * 210.00275 * 16 14 12 19 19 H 1.48500 * 109.47061 * 330.00386 * 16 14 12 20 20 C 1.38243 * 119.95130 * 325.51302 * 7 6 4 21 21 H 1.08997 * 109.47106 * 184.26312 * 3 2 1 22 22 H 1.09002 * 109.47245 * 304.26395 * 3 2 1 23 23 H 0.96998 * 120.00138 * 354.89751 * 6 4 3 24 24 H 1.08004 * 119.78321 * 359.97438 * 8 7 6 25 25 H 1.07994 * 119.83626 * 180.02562 * 9 8 7 26 26 H 1.08002 * 120.05645 * 180.02562 * 10 9 8 27 27 H 0.97002 * 120.00442 * 179.97438 * 15 14 12 28 28 H 1.08001 * 120.15498 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1107 -0.6161 -1.2799 5 8 2.3227 -1.0163 -2.1105 6 7 4.4358 -0.7219 -1.5019 7 6 4.9034 -1.3898 -2.6393 8 6 6.0648 -0.9542 -3.2731 9 6 6.5363 -1.6073 -4.3996 10 6 5.8617 -2.6958 -4.9053 11 6 4.6869 -3.1473 -4.2754 12 6 3.9883 -4.2644 -4.7894 13 1 2.9310 -4.3744 -4.5989 14 6 4.6671 -5.2270 -5.5448 15 7 5.9735 -5.2860 -5.5076 16 14 3.7078 -6.4280 -6.6064 17 1 3.5245 -5.8523 -7.9630 18 1 4.4566 -7.7062 -6.7080 19 1 2.3795 -6.6799 -5.9921 20 6 4.2153 -2.4843 -3.1287 21 1 2.9709 1.0256 0.0764 22 1 2.9717 -0.5778 0.8493 23 1 5.0653 -0.3353 -0.8733 24 1 6.6006 -0.1009 -2.8840 25 1 7.4379 -1.2616 -4.8832 26 1 6.2334 -3.2022 -5.7838 27 1 6.4440 -5.9536 -6.0310 28 1 3.3174 -2.8258 -2.6351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313448529.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:30 Heat of formation + Delta-G solvation = 9.899835 kcal Electronic energy + Delta-G solvation = -14701.132377 eV Core-core repulsion = 12102.897800 eV Total energy + Delta-G solvation = -2598.234576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91524 -37.39995 -36.29923 -34.54720 -33.13753 -31.05205 -29.86003 -27.84644 -25.33298 -22.17872 -20.95822 -19.89121 -18.19970 -17.22631 -16.98603 -15.76176 -15.47240 -15.00435 -14.61477 -14.05437 -13.74871 -13.05454 -13.01090 -12.73155 -12.42394 -12.14483 -11.76944 -11.66853 -11.22563 -11.15297 -10.95837 -10.47918 -10.25725 -9.72567 -9.52925 -9.12799 -9.06661 -7.49061 -6.98906 -6.74316 -4.36614 2.40448 2.57010 2.75649 2.81341 3.08999 3.14150 3.16680 3.28614 3.55658 3.90731 3.95856 4.61725 4.89225 5.00588 5.05394 5.68152 6.20058 6.34167 6.64075 6.93472 6.99338 7.03475 7.22136 7.45457 7.54724 7.66825 7.91838 8.05055 8.08824 8.18729 8.51834 8.65835 8.90832 8.94787 10.19231 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.006793 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.405497 B = 4120.938883 C = 4959.237478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.222 3.778 3 C -0.043 4.043 4 C 0.507 3.493 5 O -0.507 6.507 6 N -0.662 5.662 7 C 0.149 3.851 8 C -0.260 4.260 9 C -0.093 4.093 10 C -0.170 4.170 11 C 0.120 3.880 12 C -0.458 4.458 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.795 5.795 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.210 4.210 21 H 0.137 0.863 22 H 0.138 0.862 23 H 0.402 0.598 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.119 0.881 27 H 0.280 0.720 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 6.744 7.909 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.097 4.097 3 C -0.086 4.086 4 C 0.291 3.709 5 O -0.381 6.381 6 N -0.306 5.306 7 C 0.057 3.943 8 C -0.281 4.281 9 C -0.112 4.112 10 C -0.190 4.190 11 C 0.116 3.884 12 C -0.488 4.488 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.733 3.267 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.232 4.232 21 H 0.154 0.846 22 H 0.156 0.844 23 H 0.236 0.764 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.124 6.301 7.259 9.613 hybrid contribution 0.563 -0.383 -0.135 0.694 sum 0.439 5.919 7.124 9.272 Atomic orbital electron populations 1.81177 1.12661 1.08085 1.07728 1.28082 0.94326 0.93702 0.93559 1.19171 0.83913 1.05906 0.99632 1.20002 0.83064 0.80299 0.87584 1.90852 1.54905 1.46826 1.45491 1.43313 1.06175 1.55998 1.25125 1.17388 0.95871 0.93005 0.88008 1.20030 1.00957 1.04842 1.02254 1.20471 0.98401 0.96451 0.95838 1.21371 0.98563 0.97185 1.01879 1.17488 0.91151 0.90972 0.88741 1.19610 0.96808 1.04507 1.27850 0.90321 1.25897 0.94848 0.98027 0.95368 1.69819 1.08330 1.31048 1.32810 0.86300 0.80659 0.79064 0.80655 1.19243 1.20324 1.18580 1.20974 1.03516 0.98486 1.00199 0.84574 0.84422 0.76381 0.89133 0.88973 0.86287 0.90894 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.85 18.54 42.15 0.78 -6.06 15 2 C 0.22 2.91 14.67 -20.76 -0.30 2.61 15 3 C -0.04 -0.37 6.19 -30.67 -0.19 -0.56 15 4 C 0.51 7.62 7.54 -10.99 -0.08 7.54 15 5 O -0.51 -10.72 13.78 5.55 0.08 -10.64 15 6 N -0.66 -9.93 5.34 -9.91 -0.05 -9.99 15 7 C 0.15 3.13 6.25 -83.76 -0.52 2.61 15 8 C -0.26 -5.36 9.97 -39.10 -0.39 -5.75 15 9 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 15 10 C -0.17 -4.37 8.69 -38.84 -0.34 -4.71 15 11 C 0.12 3.23 5.57 -106.85 -0.59 2.63 15 12 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 15 13 H 0.08 2.13 7.90 -52.48 -0.41 1.71 15 14 C 0.08 1.93 5.16 -17.35 -0.09 1.84 15 15 N -0.79 -20.43 10.94 55.55 0.61 -19.82 15 16 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 15 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 19 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 20 C -0.21 -5.26 8.39 -38.69 -0.32 -5.59 15 21 H 0.14 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.14 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.40 4.02 8.82 -40.82 -0.36 3.66 15 24 H 0.09 1.57 8.06 -52.48 -0.42 1.14 15 25 H 0.09 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.12 3.15 6.16 -52.49 -0.32 2.83 15 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 15 28 H 0.11 2.72 6.49 -52.49 -0.34 2.38 15 LS Contribution 261.07 15.07 3.93 3.93 Total: -1.00 -33.51 261.07 -5.52 -39.03 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.26 Total: 4.21 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -3.58 Total: -14.68 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 1.34 Total: -35.87 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.51 -5.52 -39.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313448529.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.931 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds