Wall clock time and date at job start Sun Mar 29 2020 21:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 C 1.50701 * 109.47151 * 270.02505 * 7 6 5 9 9 O 1.21285 * 119.99946 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99887 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99804 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00165 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99510 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00732 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99619 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46923 * 60.00413 * 15 13 11 17 17 H 1.48506 * 109.46688 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47202 * 299.99943 * 15 13 11 19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5 21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 25 25 H 0.97003 * 119.99536 * 0.02562 * 10 8 7 26 26 H 0.96991 * 120.00604 * 180.02562 * 14 13 11 27 27 H 1.07993 * 119.92703 * 179.97438 * 19 6 5 28 28 H 1.08003 * 120.07687 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3465 1.4032 -0.2326 9 8 6.5583 2.3125 -0.3842 10 7 8.6716 1.6464 -0.2724 11 6 9.1284 2.9215 -0.4847 12 1 8.4266 3.7311 -0.6197 13 6 10.4945 3.1720 -0.5262 14 7 11.3486 2.1868 -0.3625 15 14 11.1170 4.9093 -0.8163 16 1 10.6217 5.7994 0.2643 17 1 12.6021 4.9095 -0.8153 18 1 10.6223 5.3999 -2.1276 19 6 4.6489 -0.1954 -1.1838 20 6 3.2694 -0.1972 -1.1910 21 1 2.7328 0.3633 2.1140 22 1 5.1923 0.3522 2.1044 23 1 7.2076 -0.3594 0.9625 24 1 7.2078 -0.6511 -0.7934 25 1 9.3020 0.9191 -0.1515 26 1 12.3022 2.3618 -0.3911 27 1 5.1926 -0.3482 -2.1042 28 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334139693.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:10 Heat of formation + Delta-G solvation = 7.633391 kcal Electronic energy + Delta-G solvation = -14371.320527 eV Core-core repulsion = 11772.987671 eV Total energy + Delta-G solvation = -2598.332857 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.59793 -38.02179 -36.40651 -34.05964 -32.58231 -31.25883 -31.00188 -28.06129 -24.85618 -22.68649 -22.45321 -19.29695 -18.84771 -17.94799 -15.96838 -15.60984 -15.44012 -14.57876 -14.45041 -13.96458 -13.86816 -13.84263 -13.40267 -12.84805 -12.76282 -12.68359 -11.90277 -11.62048 -11.56683 -11.25004 -11.08607 -10.88880 -10.47907 -10.26186 -9.56191 -8.92186 -8.78202 -8.35431 -8.03483 -6.47262 -3.88515 0.86018 1.45842 2.65116 2.98841 3.16469 3.23089 3.27498 3.82789 3.88346 3.95397 4.15551 4.87054 4.88187 4.92552 5.13651 5.19714 5.45178 5.50034 5.74938 5.79178 5.95773 6.09652 6.21076 6.34471 6.37074 6.71919 6.92198 7.46858 7.49983 7.98883 8.53468 9.11402 9.46965 9.97682 10.69972 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.058557 B = 0.004774 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.047983 B = 5863.672313 C = 6034.326404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.265 3.735 3 C -0.050 4.050 4 C -0.068 4.068 5 C -0.109 4.109 6 C -0.007 4.007 7 C -0.106 4.106 8 C 0.441 3.559 9 O -0.588 6.588 10 N -0.560 5.560 11 C -0.302 4.302 12 H 0.103 0.897 13 C 0.024 3.976 14 N -0.900 5.900 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.109 4.109 20 C -0.068 4.068 21 H 0.129 0.871 22 H 0.131 0.869 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.393 0.607 26 H 0.273 0.727 27 H 0.131 0.869 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -7.431 1.234 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.049 4.049 3 C -0.053 4.053 4 C -0.088 4.088 5 C -0.127 4.127 6 C -0.009 4.009 7 C -0.146 4.146 8 C 0.227 3.773 9 O -0.473 6.473 10 N -0.196 5.196 11 C -0.432 4.432 12 H 0.121 0.879 13 C -0.178 4.178 14 N -0.541 5.541 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.127 4.127 20 C -0.089 4.089 21 H 0.147 0.853 22 H 0.149 0.851 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.227 0.773 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.286 -6.811 1.131 11.572 hybrid contribution 1.310 0.483 -0.080 1.399 sum -7.976 -6.328 1.050 10.235 Atomic orbital electron populations 1.81210 1.12206 1.09906 1.07875 1.25820 0.92744 0.93066 0.93296 1.15936 0.83942 1.09785 0.95663 1.21058 0.94200 0.97156 0.96425 1.20955 0.93340 0.99930 0.98520 1.19727 0.95102 0.92936 0.93091 1.20718 0.91573 0.98184 1.04168 1.19658 0.83338 0.89226 0.85068 1.90558 1.55167 1.46018 1.55591 1.41881 1.04888 1.10420 1.62395 1.19664 0.91288 0.86018 1.46184 0.87926 1.25270 0.95744 0.99597 0.97212 1.69592 1.02986 1.31836 1.49673 0.85921 0.77338 0.81797 0.79199 1.19871 1.20932 1.19865 1.20951 0.93341 1.00330 0.98116 1.21058 0.94198 0.97308 0.96289 0.85342 0.85073 0.88940 0.88941 0.77318 0.91731 0.85074 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.53 18.54 41.83 0.78 -5.75 15 2 C 0.27 3.50 15.33 -22.47 -0.34 3.16 15 3 C -0.05 -0.61 5.73 -106.93 -0.61 -1.23 15 4 C -0.07 -0.81 9.76 -39.17 -0.38 -1.19 15 5 C -0.11 -1.43 9.68 -39.64 -0.38 -1.81 15 6 C -0.01 -0.10 4.38 -104.53 -0.46 -0.56 15 7 C -0.11 -1.61 5.82 -29.04 -0.17 -1.78 15 8 C 0.44 9.61 7.78 -10.98 -0.09 9.53 15 9 O -0.59 -15.05 15.61 5.55 0.09 -14.96 15 10 N -0.56 -13.39 5.29 -10.97 -0.06 -13.45 15 11 C -0.30 -8.11 9.68 -14.94 -0.14 -8.25 15 12 H 0.10 2.90 7.16 -52.49 -0.38 2.52 15 13 C 0.02 0.62 5.50 -17.47 -0.10 0.52 15 14 N -0.90 -23.63 13.05 55.50 0.72 -22.91 15 15 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 15 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 19 C -0.11 -1.43 9.68 -39.64 -0.38 -1.81 15 20 C -0.07 -0.81 9.76 -39.17 -0.38 -1.19 15 21 H 0.13 1.24 8.06 -52.49 -0.42 0.81 15 22 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 23 H 0.09 1.20 8.08 -51.93 -0.42 0.78 15 24 H 0.09 1.20 8.08 -51.93 -0.42 0.78 15 25 H 0.39 8.91 7.90 -40.82 -0.32 8.59 15 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 27 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 28 H 0.13 1.24 8.06 -52.48 -0.42 0.81 15 LS Contribution 268.21 15.07 4.04 4.04 Total: -1.00 -30.82 268.21 -5.26 -36.08 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -2.36 Total: 6.13 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.44 Total: -4.62 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 1.44 Total: -42.11 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.82 -5.26 -36.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334139693.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.716 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds