Wall clock time and date at job start Sun Mar 29 2020 21:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 C 1.50701 * 109.47151 * 270.02505 * 7 6 5 9 9 O 1.21285 * 119.99946 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99887 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99804 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00165 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99510 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00732 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99619 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46923 * 60.00413 * 15 13 11 17 17 H 1.48506 * 109.46688 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47202 * 299.99943 * 15 13 11 19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5 21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 25 25 H 0.97003 * 119.99536 * 0.02562 * 10 8 7 26 26 H 0.96991 * 120.00604 * 180.02562 * 14 13 11 27 27 H 1.07993 * 119.92703 * 179.97438 * 19 6 5 28 28 H 1.08003 * 120.07687 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3465 1.4032 -0.2326 9 8 6.5583 2.3125 -0.3842 10 7 8.6716 1.6464 -0.2724 11 6 9.1284 2.9215 -0.4847 12 1 8.4266 3.7311 -0.6197 13 6 10.4945 3.1720 -0.5262 14 7 11.3486 2.1868 -0.3625 15 14 11.1170 4.9093 -0.8163 16 1 10.6217 5.7994 0.2643 17 1 12.6021 4.9095 -0.8153 18 1 10.6223 5.3999 -2.1276 19 6 4.6489 -0.1954 -1.1838 20 6 3.2694 -0.1972 -1.1910 21 1 2.7328 0.3633 2.1140 22 1 5.1923 0.3522 2.1044 23 1 7.2076 -0.3594 0.9625 24 1 7.2078 -0.6511 -0.7934 25 1 9.3020 0.9191 -0.1515 26 1 12.3022 2.3618 -0.3911 27 1 5.1926 -0.3482 -2.1042 28 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334139693.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:10 Heat of formation + Delta-G solvation = -11.344252 kcal Electronic energy + Delta-G solvation = -14372.143460 eV Core-core repulsion = 11772.987671 eV Total energy + Delta-G solvation = -2599.155789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76504 -39.60571 -37.53237 -35.94051 -33.81116 -33.13827 -31.95587 -29.35155 -26.66095 -23.65821 -23.64707 -20.97228 -19.86345 -19.83097 -17.67029 -16.69269 -16.68980 -16.33375 -15.60069 -15.41488 -15.36107 -15.04559 -14.37035 -14.35122 -13.92459 -13.91638 -13.48711 -13.01311 -12.99784 -12.66440 -12.42580 -12.32910 -12.08019 -11.88590 -11.46359 -10.38739 -9.97391 -9.86835 -9.62288 -8.43069 -5.91260 -0.16305 0.50633 1.42021 1.44568 1.54531 1.60084 1.93271 2.11143 2.33416 2.85245 2.93274 3.24972 3.46159 3.86144 3.95431 4.04409 4.46838 4.47999 4.55800 4.76121 4.76315 4.94075 5.14289 5.31241 5.38081 5.45237 5.70133 5.92881 6.05229 6.43022 6.63476 7.16564 7.61505 8.16783 8.73629 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.058557 B = 0.004774 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.047983 B = 5863.672313 C = 6034.326404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.286 3.714 3 C -0.053 4.053 4 C -0.064 4.064 5 C -0.118 4.118 6 C -0.030 4.030 7 C -0.093 4.093 8 C 0.444 3.556 9 O -0.628 6.628 10 N -0.573 5.573 11 C -0.332 4.332 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.988 3.012 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.118 4.118 20 C -0.064 4.064 21 H 0.151 0.849 22 H 0.142 0.858 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.398 0.602 26 H 0.277 0.723 27 H 0.142 0.858 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -7.970 1.322 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.028 4.028 3 C -0.057 4.057 4 C -0.085 4.085 5 C -0.136 4.136 6 C -0.031 4.031 7 C -0.133 4.133 8 C 0.232 3.768 9 O -0.515 6.515 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.813 3.187 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.198 1.198 19 C -0.136 4.136 20 C -0.085 4.085 21 H 0.168 0.832 22 H 0.160 0.840 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.232 0.768 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.359 -7.378 1.223 11.980 hybrid contribution 1.256 0.617 -0.102 1.403 sum -8.104 -6.761 1.121 10.613 Atomic orbital electron populations 1.81237 1.13124 1.11123 1.08949 1.25837 0.92638 0.92066 0.92299 1.16035 0.83416 1.10028 0.96199 1.21293 0.93912 0.96032 0.97219 1.21154 0.93943 0.99856 0.98690 1.19828 0.94618 0.94510 0.94150 1.20658 0.92362 0.93784 1.06503 1.20783 0.82195 0.91526 0.82326 1.90528 1.56003 1.48340 1.56675 1.41963 1.05965 1.09661 1.63437 1.19607 0.91580 0.86952 1.48064 0.90359 1.25975 0.95496 1.03089 0.96643 1.69649 1.03252 1.33178 1.49874 0.85054 0.77259 0.77608 0.78829 1.19845 1.19645 1.19836 1.21151 0.93947 1.00320 0.98224 1.21292 0.93906 0.96184 0.97073 0.83155 0.84037 0.86369 0.86371 0.76770 0.91361 0.84038 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.42 18.54 19.00 0.35 -13.07 15 2 C 0.29 7.04 15.33 88.33 1.35 8.40 15 3 C -0.05 -1.20 5.73 -21.36 -0.12 -1.32 15 4 C -0.06 -1.38 9.76 22.54 0.22 -1.16 15 5 C -0.12 -2.86 9.68 22.23 0.22 -2.65 15 6 C -0.03 -0.80 4.38 -19.81 -0.09 -0.88 15 7 C -0.09 -2.66 5.82 29.10 0.17 -2.49 15 8 C 0.44 19.14 7.78 87.66 0.68 19.82 15 9 O -0.63 -32.33 15.61 -3.04 -0.05 -32.38 15 10 N -0.57 -27.52 5.29 -306.99 -1.62 -29.14 15 11 C -0.33 -18.11 9.68 84.04 0.81 -17.29 15 12 H 0.08 4.56 7.16 -2.91 -0.02 4.54 15 13 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15 14 N -0.92 -47.90 13.05 21.66 0.28 -47.61 15 15 Si 0.99 41.77 29.55 68.60 2.03 43.79 15 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 17 H -0.27 -10.86 7.11 99.48 0.71 -10.16 15 18 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 19 C -0.12 -2.86 9.68 22.23 0.22 -2.65 15 20 C -0.06 -1.38 9.76 22.54 0.22 -1.16 15 21 H 0.15 2.51 8.06 -2.91 -0.02 2.48 15 22 H 0.14 3.04 8.06 -2.91 -0.02 3.01 15 23 H 0.12 2.77 8.08 -2.38 -0.02 2.75 15 24 H 0.12 2.77 8.08 -2.39 -0.02 2.75 15 25 H 0.40 17.99 7.90 -92.71 -0.73 17.26 15 26 H 0.28 13.61 8.31 -92.71 -0.77 12.84 15 27 H 0.14 3.04 8.06 -2.91 -0.02 3.01 15 28 H 0.15 2.50 8.06 -2.91 -0.02 2.48 15 Total: -1.00 -66.08 268.21 5.60 -60.48 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.46 Total: 19.50 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.15 Total: -1.55 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -0.99 Total: -89.83 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -66.08 5.60 -60.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334139693.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.132 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds