Wall clock time and date at job start Sun Mar 29 2020 21:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37746 * 120.15548 * 2 1 4 4 C 1.38837 * 120.82860 * 180.02562 * 3 2 1 5 5 C 1.37833 * 120.56758 * 359.94514 * 4 3 2 6 6 C 1.39328 * 119.51667 * 0.02562 * 5 4 3 7 7 C 1.39595 * 120.15229 * 179.97438 * 2 1 3 8 8 N 1.35637 * 121.62507 * 0.02562 * 7 2 1 9 9 C 1.29824 * 121.62247 * 179.97438 * 8 7 2 10 10 N 1.36240 * 123.31342 * 0.02562 * 9 8 7 11 11 C 1.37103 * 119.71735 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99748 * 150.57520 * 11 10 9 13 13 C 1.39069 * 119.99922 * 330.57639 * 11 10 9 14 14 N 1.31260 * 120.00507 * 342.53532 * 13 11 10 15 15 Si 1.86800 * 119.99918 * 162.54116 * 13 11 10 16 16 H 1.48499 * 109.47155 * 59.99759 * 15 13 11 17 17 H 1.48499 * 109.47422 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46957 * 299.99847 * 15 13 11 19 19 C 1.35342 * 120.56526 * 0.25181 * 10 9 8 20 20 O 1.21718 * 121.28623 * 179.72399 * 19 10 9 21 21 H 1.08994 * 109.47433 * 270.01529 * 1 2 3 22 22 H 1.09003 * 109.46882 * 30.01635 * 1 2 3 23 23 H 1.09002 * 109.46966 * 150.00572 * 1 2 3 24 24 H 1.08007 * 119.58830 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.71217 * 179.97438 * 4 3 2 26 26 H 1.07997 * 120.24169 * 180.02562 * 5 4 3 27 27 H 1.07999 * 118.34777 * 179.97438 * 9 8 7 28 28 H 0.96996 * 120.00193 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1910 0.0000 4 6 3.5873 1.2074 -0.0005 5 6 4.3021 0.0289 0.0001 6 6 3.6215 -1.1868 0.0007 7 6 2.2082 -1.2071 0.0005 8 7 1.5668 -2.4022 0.0006 9 6 2.2189 -3.5247 0.0006 10 7 3.5793 -3.5998 0.0011 11 6 4.1923 -4.8262 0.0016 12 1 5.1626 -4.9450 -0.4576 13 6 3.5646 -5.9170 0.5933 14 7 2.5759 -5.7280 1.4356 15 14 4.1288 -7.6514 0.1894 16 1 5.5557 -7.8088 0.5694 17 1 3.3050 -8.6286 0.9454 18 1 3.9747 -7.8954 -1.2673 19 6 4.3307 -2.4741 0.0067 20 8 5.5467 -2.5259 0.0122 21 1 -0.3634 0.0003 1.0276 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6548 2.1240 -0.0004 25 1 4.1115 2.1516 -0.0009 26 1 5.3819 0.0477 0.0001 27 1 1.6547 -4.4456 0.0010 28 1 2.1379 -6.4889 1.8480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334258865.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:44 Heat of formation + Delta-G solvation = 4.417090 kcal Electronic energy + Delta-G solvation = -15432.840195 eV Core-core repulsion = 12834.367869 eV Total energy + Delta-G solvation = -2598.472326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47908 -37.87065 -36.31164 -34.07402 -32.33416 -31.65369 -29.27099 -26.39842 -25.99978 -23.45121 -22.89915 -20.26701 -18.82954 -17.78987 -17.18338 -15.69784 -15.11373 -14.61056 -14.38074 -14.19713 -13.94601 -13.19876 -12.95998 -12.72585 -12.15055 -11.82902 -11.70427 -11.56704 -11.34688 -11.15410 -11.04661 -10.85574 -10.65843 -9.75738 -9.04342 -8.96388 -8.73671 -8.29082 -7.23076 -6.89230 -4.60365 1.51477 1.54490 2.94888 2.99839 3.03331 3.20544 3.63175 3.73048 4.29398 4.42960 5.07330 5.14793 5.24849 5.39810 5.51139 5.72329 5.93199 6.01193 6.14443 6.29642 6.31780 6.51554 6.71351 6.85753 6.97423 7.02454 7.10098 7.41693 7.54106 7.92045 8.27878 8.57824 9.15163 9.23118 10.07025 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040951 B = 0.008458 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.572608 B = 3309.578646 C = 3899.062637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.101 4.101 3 C -0.090 4.090 4 C -0.171 4.171 5 C -0.044 4.044 6 C -0.213 4.213 7 C 0.171 3.829 8 N -0.573 5.573 9 C 0.383 3.617 10 N -0.362 5.362 11 C -0.346 4.346 12 H 0.116 0.884 13 C 0.047 3.953 14 N -0.851 5.851 15 Si 0.944 3.056 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.263 1.263 19 C 0.501 3.499 20 O -0.546 6.546 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.199 0.801 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 5.234 -2.264 6.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.191 4.191 5 C -0.063 4.063 6 C -0.221 4.221 7 C 0.054 3.946 8 N -0.299 5.299 9 C 0.101 3.899 10 N -0.064 5.064 11 C -0.474 4.474 12 H 0.134 0.866 13 C -0.162 4.162 14 N -0.483 5.483 15 Si 0.768 3.232 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.188 1.188 19 C 0.297 3.703 20 O -0.426 6.426 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.136 0.864 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.215 0.785 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.945 5.147 -2.117 6.822 hybrid contribution 1.117 -0.783 0.172 1.375 sum -2.828 4.364 -1.945 5.552 Atomic orbital electron populations 1.20512 0.90833 1.02110 1.01700 1.19463 0.96063 0.90797 1.03981 1.20891 0.94063 0.96786 0.99244 1.20820 0.93975 0.97311 1.06956 1.20854 0.99702 0.90853 0.94924 1.20683 0.94208 0.94316 1.12873 1.18726 0.89031 0.92448 0.94411 1.68708 1.35803 0.96052 1.29332 1.24947 0.81615 0.97358 0.86021 1.42665 1.06382 1.07853 1.49460 1.20023 1.06614 0.82505 1.38235 0.86608 1.25667 0.95916 1.01914 0.92732 1.69760 1.22261 1.34077 1.22241 0.85703 0.79398 0.78741 0.79404 1.18994 1.20096 1.18796 1.18562 0.87436 0.84038 0.80224 1.90669 1.12795 1.86869 1.52258 0.92025 0.92809 0.90600 0.86401 0.86446 0.85810 0.78529 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.81 36.01 0.35 -1.10 15 2 C -0.10 -1.88 5.91 -104.29 -0.62 -2.49 15 3 C -0.09 -1.46 9.66 -39.54 -0.38 -1.84 15 4 C -0.17 -2.86 10.02 -39.51 -0.40 -3.25 15 5 C -0.04 -0.88 9.68 -39.32 -0.38 -1.26 15 6 C -0.21 -5.00 5.89 -104.77 -0.62 -5.62 15 7 C 0.17 3.80 6.60 -84.50 -0.56 3.24 15 8 N -0.57 -13.17 9.47 -11.92 -0.11 -13.29 15 9 C 0.38 9.24 10.23 -89.83 -0.92 8.32 15 10 N -0.36 -9.45 2.76 -63.83 -0.18 -9.62 15 11 C -0.35 -9.00 9.10 -14.89 -0.14 -9.13 15 12 H 0.12 3.05 7.62 -52.49 -0.40 2.65 15 13 C 0.05 1.13 4.97 -17.49 -0.09 1.04 15 14 N -0.85 -20.75 11.21 55.50 0.62 -20.12 15 15 Si 0.94 18.24 29.59 -169.99 -5.03 13.22 15 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 17 H -0.28 -5.17 7.11 56.52 0.40 -4.77 15 18 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 19 C 0.50 13.29 7.61 -12.47 -0.09 13.19 15 20 O -0.55 -15.50 16.51 5.17 0.09 -15.41 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.05 0.67 8.09 -51.93 -0.42 0.25 15 23 H 0.08 1.24 7.57 -51.93 -0.39 0.84 15 24 H 0.12 1.49 8.06 -52.48 -0.42 1.06 15 25 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.12 2.40 7.83 -52.49 -0.41 1.99 15 27 H 0.20 4.60 6.13 -52.49 -0.32 4.28 15 28 H 0.29 6.44 8.30 -40.82 -0.34 6.10 15 LS Contribution 250.12 15.07 3.77 3.77 Total: -1.00 -28.67 250.12 -7.02 -35.69 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -2.35 Total: 4.67 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -3.83 Total: 1.10 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.33 Total: -43.03 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.67 -7.02 -35.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334258865.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds