Wall clock time and date at job start Sun Mar 29 2020 21:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37746 * 120.15548 * 2 1 4 4 C 1.38837 * 120.82860 * 180.02562 * 3 2 1 5 5 C 1.37833 * 120.56758 * 359.94514 * 4 3 2 6 6 C 1.39328 * 119.51667 * 0.02562 * 5 4 3 7 7 C 1.39595 * 120.15229 * 179.97438 * 2 1 3 8 8 N 1.35637 * 121.62507 * 0.02562 * 7 2 1 9 9 C 1.29824 * 121.62247 * 179.97438 * 8 7 2 10 10 N 1.36240 * 123.31342 * 0.02562 * 9 8 7 11 11 C 1.37103 * 119.71735 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99748 * 150.57520 * 11 10 9 13 13 C 1.39069 * 119.99922 * 330.57639 * 11 10 9 14 14 N 1.31260 * 120.00507 * 342.53532 * 13 11 10 15 15 Si 1.86800 * 119.99918 * 162.54116 * 13 11 10 16 16 H 1.48499 * 109.47155 * 59.99759 * 15 13 11 17 17 H 1.48499 * 109.47422 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46957 * 299.99847 * 15 13 11 19 19 C 1.35342 * 120.56526 * 0.25181 * 10 9 8 20 20 O 1.21718 * 121.28623 * 179.72399 * 19 10 9 21 21 H 1.08994 * 109.47433 * 270.01529 * 1 2 3 22 22 H 1.09003 * 109.46882 * 30.01635 * 1 2 3 23 23 H 1.09002 * 109.46966 * 150.00572 * 1 2 3 24 24 H 1.08007 * 119.58830 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.71217 * 179.97438 * 4 3 2 26 26 H 1.07997 * 120.24169 * 180.02562 * 5 4 3 27 27 H 1.07999 * 118.34777 * 179.97438 * 9 8 7 28 28 H 0.96996 * 120.00193 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1910 0.0000 4 6 3.5873 1.2074 -0.0005 5 6 4.3021 0.0289 0.0001 6 6 3.6215 -1.1868 0.0007 7 6 2.2082 -1.2071 0.0005 8 7 1.5668 -2.4022 0.0006 9 6 2.2189 -3.5247 0.0006 10 7 3.5793 -3.5998 0.0011 11 6 4.1923 -4.8262 0.0016 12 1 5.1626 -4.9450 -0.4576 13 6 3.5646 -5.9170 0.5933 14 7 2.5759 -5.7280 1.4356 15 14 4.1288 -7.6514 0.1894 16 1 5.5557 -7.8088 0.5694 17 1 3.3050 -8.6286 0.9454 18 1 3.9747 -7.8954 -1.2673 19 6 4.3307 -2.4741 0.0067 20 8 5.5467 -2.5259 0.0122 21 1 -0.3634 0.0003 1.0276 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6548 2.1240 -0.0004 25 1 4.1115 2.1516 -0.0009 26 1 5.3819 0.0477 0.0001 27 1 1.6547 -4.4456 0.0010 28 1 2.1379 -6.4889 1.8480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334258865.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:43 Heat of formation + Delta-G solvation = -11.969158 kcal Electronic energy + Delta-G solvation = -15433.550756 eV Core-core repulsion = 12834.367869 eV Total energy + Delta-G solvation = -2599.182887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27565 -39.50537 -38.22226 -35.84095 -33.94926 -33.36722 -30.92604 -27.98527 -27.66684 -25.16940 -24.64207 -21.88301 -20.56516 -19.50508 -18.99351 -17.56101 -16.81710 -16.40983 -15.93616 -15.88119 -15.59807 -14.66127 -14.64692 -14.29365 -13.91719 -13.53859 -13.21993 -13.07609 -12.96842 -12.67253 -12.48213 -12.38768 -12.14714 -11.49584 -10.98019 -10.75924 -10.55523 -9.81863 -8.96740 -8.66362 -6.56284 -0.12931 -0.05459 1.34473 1.38016 1.43187 1.52829 1.99701 2.09843 2.49498 2.66346 3.28342 3.46941 3.61664 3.91638 4.11639 4.38729 4.39956 4.57659 4.81486 4.87382 4.96830 4.99122 5.11129 5.28648 5.43919 5.45546 5.61471 5.69093 5.99065 6.06169 6.38840 6.68203 7.27912 7.33518 8.26357 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040951 B = 0.008458 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.572608 B = 3309.578646 C = 3899.062637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.102 4.102 3 C -0.075 4.075 4 C -0.140 4.140 5 C -0.071 4.071 6 C -0.235 4.235 7 C 0.133 3.867 8 N -0.562 5.562 9 C 0.371 3.629 10 N -0.372 5.372 11 C -0.389 4.389 12 H 0.097 0.903 13 C 0.021 3.979 14 N -0.873 5.873 15 Si 1.014 2.986 16 H -0.270 1.270 17 H -0.259 1.259 18 H -0.254 1.254 19 C 0.473 3.527 20 O -0.591 6.591 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.059 0.941 24 H 0.173 0.827 25 H 0.165 0.835 26 H 0.120 0.880 27 H 0.199 0.801 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 7.305 -2.309 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.158 4.158 5 C -0.091 4.091 6 C -0.242 4.242 7 C 0.018 3.982 8 N -0.287 5.287 9 C 0.087 3.913 10 N -0.075 5.075 11 C -0.516 4.516 12 H 0.115 0.885 13 C -0.187 4.187 14 N -0.505 5.505 15 Si 0.833 3.167 16 H -0.195 1.195 17 H -0.183 1.183 18 H -0.178 1.178 19 C 0.271 3.729 20 O -0.474 6.474 21 H 0.089 0.911 22 H 0.111 0.889 23 H 0.078 0.922 24 H 0.190 0.810 25 H 0.182 0.818 26 H 0.138 0.862 27 H 0.215 0.785 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.675 7.269 -2.161 9.472 hybrid contribution 1.532 -1.158 0.206 1.931 sum -4.143 6.111 -1.955 7.638 Atomic orbital electron populations 1.20579 0.88389 1.03321 1.02609 1.20001 0.97955 0.90060 1.02400 1.21512 0.93961 0.97880 0.96038 1.21397 0.94538 0.97568 1.02314 1.21045 0.99997 0.91158 0.96855 1.20828 0.95020 0.94020 1.14307 1.19184 0.88986 0.93464 0.96569 1.68681 1.35784 0.96363 1.27885 1.24982 0.81086 0.97965 0.87219 1.42759 1.06954 1.07876 1.49876 1.20109 1.07087 0.83708 1.40727 0.88514 1.26569 0.95456 1.05124 0.91546 1.69801 1.22744 1.35715 1.22280 0.84706 0.78627 0.73583 0.79744 1.19536 1.18257 1.17801 1.19240 0.87478 0.85512 0.80628 1.90593 1.14201 1.87590 1.55058 0.91114 0.88863 0.92204 0.80968 0.81764 0.86169 0.78456 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.48 9.81 71.24 0.70 -1.78 15 2 C -0.10 -3.48 5.91 -19.65 -0.12 -3.59 15 3 C -0.07 -2.00 9.66 22.30 0.22 -1.79 15 4 C -0.14 -4.04 10.02 22.32 0.22 -3.82 15 5 C -0.07 -2.80 9.68 22.44 0.22 -2.59 15 6 C -0.24 -11.30 5.89 -19.96 -0.12 -11.42 15 7 C 0.13 5.90 6.60 39.65 0.26 6.17 15 8 N -0.56 -26.38 9.47 -191.61 -1.81 -28.20 15 9 C 0.37 18.71 10.23 180.07 1.84 20.55 15 10 N -0.37 -20.65 2.76 -473.75 -1.31 -21.95 15 11 C -0.39 -21.52 9.10 84.07 0.77 -20.76 15 12 H 0.10 5.53 7.62 -2.91 -0.02 5.51 15 13 C 0.02 1.02 4.97 84.98 0.42 1.44 15 14 N -0.87 -43.52 11.21 21.68 0.24 -43.28 15 15 Si 1.01 37.87 29.59 68.60 2.03 39.90 15 16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 17 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 18 H -0.25 -9.05 7.11 99.48 0.71 -8.35 15 19 C 0.47 26.73 7.61 86.44 0.66 27.39 15 20 O -0.59 -36.03 16.51 -4.41 -0.07 -36.10 15 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.09 1.79 8.09 -2.39 -0.02 1.77 15 23 H 0.06 1.81 7.57 -2.39 -0.02 1.79 15 24 H 0.17 2.89 8.06 -2.91 -0.02 2.87 15 25 H 0.16 3.29 8.06 -2.91 -0.02 3.26 15 26 H 0.12 4.75 7.83 -2.91 -0.02 4.72 15 27 H 0.20 9.69 6.13 -2.91 -0.02 9.67 15 28 H 0.30 13.35 8.30 -92.71 -0.77 12.58 15 Total: -1.00 -67.27 250.12 5.33 -61.93 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.18 Total: 17.89 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.07 Total: 9.81 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -2.88 Total: -93.43 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.07 Total: -36.10 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -67.27 5.33 -61.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334258865.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.963 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds