Wall clock time and date at job start Sun Mar 29 2020 21:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30043 * 126.18972 * 2 1 4 4 O 1.21284 * 110.48086 * 179.70509 * 3 2 1 5 5 C 1.34182 * 109.69557 * 0.47549 * 4 3 2 6 6 C 1.47849 * 126.67267 * 179.80373 * 5 4 3 7 7 C 1.39939 * 120.02608 * 179.66715 * 6 5 4 8 8 C 1.38329 * 120.35665 * 180.02562 * 7 6 5 9 9 C 1.37752 * 120.41293 * 359.97438 * 8 7 6 10 10 C 1.40764 * 120.03674 * 359.78273 * 9 8 7 11 11 C 1.41437 * 120.17697 * 180.25715 * 10 9 8 12 12 H 1.07997 * 119.99632 * 24.67617 * 11 10 9 13 13 C 1.39930 * 119.99723 * 204.67456 * 11 10 9 14 14 N 1.30823 * 120.00395 * 17.88599 * 13 11 10 15 15 Si 1.86800 * 119.99758 * 197.88172 * 13 11 10 16 16 H 1.48499 * 109.47153 * 60.00052 * 15 13 11 17 17 H 1.48496 * 109.47375 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47303 * 300.00316 * 15 13 11 19 19 C 1.38987 * 120.02586 * 359.68063 * 6 5 4 20 20 N 1.32106 * 106.65380 * 359.53594 * 5 4 3 21 21 H 1.09004 * 109.47124 * 269.99700 * 1 2 3 22 22 H 1.09000 * 109.47400 * 29.98946 * 1 2 3 23 23 H 1.08994 * 109.47605 * 149.99824 * 1 2 3 24 24 H 1.08007 * 119.82207 * 0.03723 * 7 6 5 25 25 H 1.08006 * 119.79483 * 179.97438 * 8 7 6 26 26 H 1.07996 * 119.98069 * 180.02562 * 9 8 7 27 27 H 0.97000 * 120.00624 * 179.97438 * 14 13 11 28 28 H 1.07996 * 120.20229 * 359.96255 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2748 1.0495 0.0000 4 8 3.4423 0.7212 0.0058 5 6 3.5356 -0.6174 -0.0002 6 6 4.7800 -1.4158 -0.0002 7 6 4.7151 -2.8137 0.0000 8 6 5.8751 -3.5674 0.0005 9 6 7.1071 -2.9512 0.0002 10 6 7.1921 -1.5461 -0.0052 11 6 8.4556 -0.9104 -0.0110 12 1 9.3188 -1.4283 -0.4019 13 6 8.5869 0.3897 0.4898 14 7 7.6608 0.8875 1.2682 15 14 10.0847 1.4142 0.0468 16 1 10.1465 1.5894 -1.4265 17 1 9.9855 2.7441 0.7001 18 1 11.3130 0.7236 0.5151 19 6 6.0152 -0.7785 -0.0002 20 7 2.2994 -1.0831 -0.0001 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8901 -0.5137 23 1 -0.3634 -0.8899 -0.5138 24 1 3.7542 -3.3068 -0.0003 25 1 5.8144 -4.6457 0.0011 26 1 8.0082 -3.5464 0.0002 27 1 7.7519 1.7886 1.6156 28 1 6.0701 0.3000 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334814186.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:39 Heat of formation + Delta-G solvation = 76.291168 kcal Electronic energy + Delta-G solvation = -14990.421119 eV Core-core repulsion = 12395.065487 eV Total energy + Delta-G solvation = -2595.355632 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.86625 -37.74025 -35.50418 -33.96115 -32.70312 -29.88055 -29.67174 -28.53989 -25.46168 -23.68895 -22.46829 -20.81014 -20.05323 -17.69126 -17.48444 -16.67512 -15.46994 -14.83927 -14.61288 -13.80345 -13.40259 -13.37793 -13.01912 -12.70521 -12.39236 -11.98126 -11.80076 -11.49556 -11.19582 -10.98870 -10.79049 -10.61033 -10.47224 -9.90890 -9.81958 -9.69592 -9.24219 -7.64235 -7.60122 -6.90261 -4.51972 1.34902 2.42424 2.70998 3.02707 3.03463 3.07552 3.27076 3.46128 3.84778 4.13331 4.47580 4.53564 5.41582 5.45035 5.48202 5.59952 5.89106 6.07782 6.28334 6.33269 6.47866 6.64282 6.84344 6.93603 7.09935 7.23120 7.58664 7.71889 7.80766 8.00496 8.36183 8.67121 8.70538 8.74627 10.04822 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.007796 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.021790 B = 3590.861514 C = 4434.106847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.159 3.841 3 N -0.406 5.406 4 O 0.075 5.925 5 C 0.267 3.733 6 C -0.034 4.034 7 C -0.187 4.187 8 C -0.097 4.097 9 C -0.200 4.200 10 C 0.102 3.898 11 C -0.459 4.459 12 H 0.083 0.917 13 C 0.075 3.925 14 N -0.789 5.789 15 Si 0.911 3.089 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.113 4.113 20 N -0.502 5.502 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.286 0.714 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -0.569 -1.599 5.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.114 4.114 3 N -0.119 5.119 4 O 0.019 5.981 5 C 0.052 3.948 6 C -0.037 4.037 7 C -0.208 4.208 8 C -0.115 4.115 9 C -0.220 4.220 10 C 0.099 3.901 11 C -0.488 4.488 12 H 0.101 0.899 13 C -0.144 4.144 14 N -0.414 5.414 15 Si 0.735 3.265 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.189 1.189 19 C -0.134 4.134 20 N -0.236 5.236 21 H 0.102 0.898 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.095 0.174 -1.447 6.267 hybrid contribution 0.764 0.519 -0.013 0.924 sum -5.332 0.693 -1.459 5.571 Atomic orbital electron populations 1.20022 0.83621 1.04030 1.03741 1.25740 1.00238 0.84341 1.01072 1.74538 0.89651 1.24303 1.23360 1.85392 1.21530 1.24890 1.66278 1.26989 0.94900 0.80871 0.91991 1.17216 0.85717 0.91443 1.09292 1.20337 0.97630 0.90985 1.11863 1.20482 0.92545 0.97673 1.00844 1.21210 0.95907 0.94681 1.10250 1.17478 0.92865 0.90810 0.88928 1.19557 0.95075 0.98305 1.35854 0.89884 1.25948 0.97975 0.98017 0.92448 1.69754 1.33383 1.16711 1.21537 0.86306 0.81347 0.78717 0.80096 1.18659 1.20209 1.18894 1.21609 0.89670 1.00587 1.01562 1.72115 0.99389 1.28527 1.23579 0.89825 0.90015 0.89455 0.87652 0.88185 0.88157 0.90305 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 36.00 0.38 -0.31 15 2 C 0.16 2.93 8.20 -156.56 -1.28 1.65 15 3 N -0.41 -8.26 12.15 31.18 0.38 -7.88 15 4 O 0.07 1.65 11.12 16.70 0.19 1.84 15 5 C 0.27 5.93 8.01 -13.84 -0.11 5.82 15 6 C -0.03 -0.79 5.87 -105.05 -0.62 -1.40 15 7 C -0.19 -4.07 9.71 -38.91 -0.38 -4.45 15 8 C -0.10 -2.03 10.01 -39.73 -0.40 -2.43 15 9 C -0.20 -4.52 9.78 -38.81 -0.38 -4.90 15 10 C 0.10 2.54 5.57 -106.87 -0.60 1.94 15 11 C -0.46 -11.38 9.05 -37.73 -0.34 -11.72 15 12 H 0.08 1.95 7.91 -52.49 -0.42 1.54 15 13 C 0.08 1.79 5.14 -17.35 -0.09 1.70 15 14 N -0.79 -19.58 10.96 55.55 0.61 -18.97 15 15 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 15 16 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 17 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 19 C -0.11 -2.80 8.37 -38.45 -0.32 -3.12 15 20 N -0.50 -10.37 11.25 -10.17 -0.11 -10.49 15 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.11 2.15 7.87 -52.48 -0.41 1.74 15 25 H 0.10 1.76 8.06 -52.48 -0.42 1.34 15 26 H 0.10 2.08 8.06 -52.49 -0.42 1.66 15 27 H 0.29 6.52 8.30 -40.82 -0.34 6.18 15 28 H 0.13 3.39 6.03 -52.49 -0.32 3.07 15 LS Contribution 257.24 15.07 3.88 3.88 Total: -1.00 -26.78 257.24 -6.62 -33.40 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -2.39 Total: 2.66 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -4.14 Total: -17.24 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.87 Total: -37.34 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.19 Total: 1.84 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.78 -6.62 -33.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334814186.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.696 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds