Wall clock time and date at job start Sun Mar 29 2020 22:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.48342 * 2 1 4 4 C 1.53111 * 109.40618 * 240.00915 * 2 1 3 5 5 C 1.53171 * 109.15713 * 297.49335 * 4 2 1 6 6 H 1.09000 * 109.54599 * 63.06397 * 5 4 2 7 7 S 1.81401 * 109.54387 * 183.24252 * 5 4 2 8 8 C 1.81400 * 102.99962 * 184.82239 * 7 5 4 9 9 C 1.50703 * 109.47010 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00159 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00120 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00089 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.53179 * 109.11061 * 303.14990 * 5 4 2 18 18 C 1.53098 * 109.16340 * 56.93955 * 17 5 4 19 19 O 1.42903 * 109.40962 * 302.38929 * 18 17 5 20 20 H 1.08996 * 109.47378 * 299.97411 * 1 2 3 21 21 H 1.08997 * 109.47010 * 59.97876 * 1 2 3 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47866 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47594 * 300.02471 * 3 2 1 25 25 H 1.09008 * 109.47058 * 60.02310 * 3 2 1 26 26 H 1.08999 * 109.45070 * 177.63371 * 4 2 1 27 27 H 1.08996 * 109.59854 * 57.44310 * 4 2 1 28 28 H 1.09003 * 109.46905 * 60.00174 * 8 7 5 29 29 H 1.08996 * 109.47345 * 299.99729 * 8 7 5 30 30 H 0.96998 * 119.99255 * 0.02562 * 12 11 9 31 31 H 1.09007 * 109.52293 * 176.84186 * 17 5 4 32 32 H 1.08996 * 109.52922 * 296.96998 * 17 5 4 33 33 H 1.09000 * 109.47997 * 62.37090 * 18 17 5 34 34 H 1.08994 * 109.48104 * 182.39708 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4423 0.0000 4 6 2.0387 -0.7219 -1.2508 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2195 -1.2414 7 16 2.2527 -3.0709 -2.6407 8 6 1.4865 -4.7093 -2.5018 9 6 1.9566 -5.5815 -3.6373 10 1 2.6470 -5.1894 -4.3695 11 6 1.5046 -6.8799 -3.7420 12 7 0.6636 -7.3573 -2.8508 13 14 2.0879 -7.9613 -5.1490 14 1 1.1669 -7.8104 -6.3041 15 1 2.1028 -9.3798 -4.7099 16 1 3.4579 -7.5535 -5.5518 17 6 2.0765 -2.8322 0.0810 18 6 1.5645 -2.0284 1.2792 19 8 2.0066 -0.6742 1.1664 20 1 -0.3634 0.5134 0.8902 21 1 -0.3633 0.5141 -0.8898 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1302 1.4422 -0.0005 24 1 1.6767 1.9564 -0.8897 25 1 1.6773 1.9561 0.8903 26 1 3.1279 -0.6857 -1.2730 27 1 1.6390 -0.2364 -2.1410 28 1 0.4021 -4.6082 -2.5467 29 1 1.7701 -5.1638 -1.5526 30 1 0.3611 -6.7958 -2.1200 31 1 1.7037 -3.8547 0.1423 32 1 3.1664 -2.8411 0.0861 33 1 0.4750 -2.0550 1.2959 34 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335233147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:41 Heat of formation + Delta-G solvation = -77.007749 kcal Electronic energy + Delta-G solvation = -14469.035933 eV Core-core repulsion = 12106.017056 eV Total energy + Delta-G solvation = -2363.018877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85703 -33.72120 -33.58097 -33.32129 -28.31329 -27.96487 -27.38058 -24.28150 -22.85856 -21.91865 -19.16967 -17.13521 -16.24736 -16.01525 -15.32908 -14.81632 -14.40740 -13.92246 -13.74660 -13.46063 -13.06973 -12.65025 -12.44938 -12.21408 -12.06591 -11.72503 -11.64059 -11.43957 -11.10326 -10.83422 -10.77876 -10.69414 -10.16522 -9.99274 -9.35502 -9.07787 -8.72514 -8.55557 -6.81166 -6.54891 -4.26481 2.51366 3.38703 3.42305 3.58034 3.70930 3.76138 4.43797 4.67568 4.78510 4.83805 5.00254 5.22612 5.25638 5.26195 5.41342 5.45927 5.50075 5.59168 5.68320 5.74002 5.83195 5.92443 6.01860 6.05914 6.20351 6.22408 6.42957 6.74487 6.80089 7.28630 7.80223 8.25876 8.63761 9.42999 10.85081 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.056293 B = 0.005750 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.275480 B = 4868.249206 C = 5071.193437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.114 3.886 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.062 4.062 6 H 0.079 0.921 7 S -0.287 6.287 8 C 0.075 3.925 9 C -0.591 4.591 10 H 0.061 0.939 11 C 0.025 3.975 12 N -0.906 5.906 13 Si 1.079 2.921 14 H -0.285 1.285 15 H -0.282 1.282 16 H -0.286 1.286 17 C -0.148 4.148 18 C 0.062 3.938 19 O -0.375 6.375 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 13.675 6.805 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 C -0.193 4.193 4 C -0.155 4.155 5 C -0.191 4.191 6 H 0.097 0.903 7 S -0.056 6.056 8 C -0.072 4.072 9 C -0.630 4.630 10 H 0.079 0.921 11 C -0.181 4.181 12 N -0.541 5.541 13 Si 0.906 3.094 14 H -0.212 1.212 15 H -0.207 1.207 16 H -0.212 1.212 17 C -0.188 4.188 18 C -0.016 4.016 19 O -0.294 6.294 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.915 12.611 5.470 13.776 hybrid contribution -0.992 0.825 1.377 1.887 sum -0.077 13.436 6.847 15.080 Atomic orbital electron populations 1.22464 0.95881 1.02830 1.02584 1.21490 0.93045 0.92675 0.85430 1.21735 1.02008 0.93221 1.02306 1.21983 1.02291 0.93252 0.98012 1.23092 1.02064 0.97280 0.96682 0.90307 1.86618 1.66467 1.16783 1.35765 1.21084 0.96713 0.88588 1.00803 1.21592 1.31487 0.98611 1.11313 0.92074 1.25966 0.94417 0.96064 1.01643 1.70784 1.30203 1.39657 1.13506 0.83394 0.75929 0.75659 0.74412 1.21155 1.20745 1.21155 1.22503 1.02740 0.99788 0.93732 1.22616 0.98622 0.82046 0.98329 1.87925 1.73855 1.24674 1.42943 0.91938 0.91397 0.91824 0.91753 0.91106 0.91906 0.90416 0.90383 0.95879 0.95551 0.92225 0.90629 0.90103 0.93056 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 7.93 37.16 0.29 -1.75 16 2 C 0.11 1.44 1.11 -90.57 -0.10 1.34 16 3 C -0.14 -1.39 8.85 37.15 0.33 -1.06 16 4 C -0.12 -1.69 4.22 -26.59 -0.11 -1.80 16 5 C -0.06 -1.07 2.43 -26.55 -0.06 -1.13 16 6 H 0.08 1.35 6.62 -51.93 -0.34 1.01 16 7 S -0.29 -6.34 21.08 -107.50 -2.27 -8.61 16 8 C 0.08 1.96 4.72 36.01 0.17 2.13 16 9 C -0.59 -17.05 9.13 -34.44 -0.31 -17.36 16 10 H 0.06 1.79 7.71 -52.48 -0.40 1.39 16 11 C 0.02 0.71 5.46 -17.82 -0.10 0.61 16 12 N -0.91 -27.21 13.65 55.43 0.76 -26.46 16 13 Si 1.08 25.19 29.90 -169.99 -5.08 20.10 16 14 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.15 -2.38 5.30 -26.59 -0.14 -2.52 16 18 C 0.06 0.83 6.52 37.21 0.24 1.08 16 19 O -0.37 -5.28 10.24 -35.23 -0.36 -5.64 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.78 4.98 -51.93 -0.26 0.52 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.02 0.62 8.01 -51.92 -0.42 0.20 16 29 H 0.03 0.70 7.12 -51.93 -0.37 0.33 16 30 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 31 H 0.08 1.30 7.09 -51.93 -0.37 0.93 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.65 6.34 -51.93 -0.33 0.32 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -30.51 280.21 -7.91 -38.42 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.39 Total: -1.56 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 0.21 Total: -20.48 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.76 Total: -26.46 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.36 Total: -5.64 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.10 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -2.27 Total: -8.61 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.51 -7.91 -38.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335233147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.591 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds