Wall clock time and date at job start Sun Mar 29 2020 22:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.48342 * 2 1 4 4 C 1.53111 * 109.40618 * 240.00915 * 2 1 3 5 5 C 1.53171 * 109.15713 * 297.49335 * 4 2 1 6 6 H 1.09000 * 109.54599 * 63.06397 * 5 4 2 7 7 S 1.81401 * 109.54387 * 183.24252 * 5 4 2 8 8 C 1.81400 * 102.99962 * 184.82239 * 7 5 4 9 9 C 1.50703 * 109.47010 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00159 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00120 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00089 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.53179 * 109.11061 * 303.14990 * 5 4 2 18 18 C 1.53098 * 109.16340 * 56.93955 * 17 5 4 19 19 O 1.42903 * 109.40962 * 302.38929 * 18 17 5 20 20 H 1.08996 * 109.47378 * 299.97411 * 1 2 3 21 21 H 1.08997 * 109.47010 * 59.97876 * 1 2 3 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47866 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47594 * 300.02471 * 3 2 1 25 25 H 1.09008 * 109.47058 * 60.02310 * 3 2 1 26 26 H 1.08999 * 109.45070 * 177.63371 * 4 2 1 27 27 H 1.08996 * 109.59854 * 57.44310 * 4 2 1 28 28 H 1.09003 * 109.46905 * 60.00174 * 8 7 5 29 29 H 1.08996 * 109.47345 * 299.99729 * 8 7 5 30 30 H 0.96998 * 119.99255 * 0.02562 * 12 11 9 31 31 H 1.09007 * 109.52293 * 176.84186 * 17 5 4 32 32 H 1.08996 * 109.52922 * 296.96998 * 17 5 4 33 33 H 1.09000 * 109.47997 * 62.37090 * 18 17 5 34 34 H 1.08994 * 109.48104 * 182.39708 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4423 0.0000 4 6 2.0387 -0.7219 -1.2508 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2195 -1.2414 7 16 2.2527 -3.0709 -2.6407 8 6 1.4865 -4.7093 -2.5018 9 6 1.9566 -5.5815 -3.6373 10 1 2.6470 -5.1894 -4.3695 11 6 1.5046 -6.8799 -3.7420 12 7 0.6636 -7.3573 -2.8508 13 14 2.0879 -7.9613 -5.1490 14 1 1.1669 -7.8104 -6.3041 15 1 2.1028 -9.3798 -4.7099 16 1 3.4579 -7.5535 -5.5518 17 6 2.0765 -2.8322 0.0810 18 6 1.5645 -2.0284 1.2792 19 8 2.0066 -0.6742 1.1664 20 1 -0.3634 0.5134 0.8902 21 1 -0.3633 0.5141 -0.8898 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1302 1.4422 -0.0005 24 1 1.6767 1.9564 -0.8897 25 1 1.6773 1.9561 0.8903 26 1 3.1279 -0.6857 -1.2730 27 1 1.6390 -0.2364 -2.1410 28 1 0.4021 -4.6082 -2.5467 29 1 1.7701 -5.1638 -1.5526 30 1 0.3611 -6.7958 -2.1200 31 1 1.7037 -3.8547 0.1423 32 1 3.1664 -2.8411 0.0861 33 1 0.4750 -2.0550 1.2959 34 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335233147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:40 Heat of formation + Delta-G solvation = -94.829571 kcal Electronic energy + Delta-G solvation = -14469.808745 eV Core-core repulsion = 12106.017056 eV Total energy + Delta-G solvation = -2363.791690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.96648 -35.74044 -34.86802 -34.52291 -30.26699 -29.26108 -28.27020 -25.79737 -24.76580 -23.09846 -20.30719 -19.23277 -17.49883 -17.21733 -16.72284 -16.30209 -15.74633 -15.61923 -15.38822 -14.96856 -14.55424 -14.09926 -13.80150 -13.58091 -13.06340 -12.97151 -12.89153 -12.68157 -12.59428 -12.37874 -12.15497 -12.02038 -11.95113 -11.19612 -11.03574 -10.89257 -10.73231 -10.31792 -8.85351 -8.64771 -6.58882 0.84171 1.50325 1.58871 1.77634 1.85096 2.48475 2.73878 3.00598 3.51004 3.54636 3.76140 3.98852 4.00815 4.16813 4.23233 4.31944 4.49629 4.56367 4.58597 4.64038 4.73703 4.76655 4.85266 4.92234 4.96283 5.00431 5.01951 5.26548 5.34605 5.60405 5.94284 6.23421 6.32423 7.19737 8.55112 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.056293 B = 0.005750 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.275480 B = 4868.249206 C = 5071.193437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 C -0.133 4.133 4 C -0.112 4.112 5 C -0.049 4.049 6 H 0.080 0.920 7 S -0.305 6.305 8 C 0.078 3.922 9 C -0.611 4.611 10 H 0.052 0.948 11 C -0.022 4.022 12 N -0.925 5.925 13 Si 1.126 2.874 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.272 1.272 17 C -0.146 4.146 18 C 0.068 3.932 19 O -0.382 6.382 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.012 0.988 30 H 0.256 0.744 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 15.030 6.955 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.072 3.928 3 C -0.190 4.190 4 C -0.151 4.151 5 C -0.178 4.178 6 H 0.099 0.901 7 S -0.075 6.075 8 C -0.069 4.069 9 C -0.650 4.650 10 H 0.071 0.929 11 C -0.222 4.222 12 N -0.561 5.561 13 Si 0.946 3.054 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.196 1.196 17 C -0.186 4.186 18 C -0.010 4.010 19 O -0.302 6.302 20 H 0.095 0.905 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.919 13.986 5.629 15.104 hybrid contribution -0.999 0.509 1.394 1.789 sum -0.079 14.496 7.023 16.108 Atomic orbital electron populations 1.22463 0.94727 1.02444 1.04001 1.21665 0.93967 0.93475 0.83656 1.21759 1.01889 0.91545 1.03806 1.22021 1.01893 0.91300 0.99892 1.23240 1.01881 0.98230 0.94443 0.90129 1.86455 1.66686 1.14786 1.39534 1.20791 0.95768 0.91047 0.99330 1.21915 1.31522 0.99611 1.11927 0.92928 1.27530 0.93626 0.97745 1.03273 1.70905 1.31474 1.39664 1.14042 0.82825 0.76499 0.74155 0.71967 1.19335 1.20070 1.19643 1.22456 1.02100 0.99369 0.94635 1.22625 0.99280 0.81583 0.97503 1.87935 1.74217 1.24599 1.43425 0.90464 0.90137 0.93077 0.92040 0.89354 0.90702 0.91175 0.89511 0.97598 0.96969 0.93422 0.92410 0.91068 0.91939 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 7.93 71.98 0.57 -3.00 16 2 C 0.11 2.56 1.11 -10.76 -0.01 2.55 16 3 C -0.13 -2.31 8.85 71.98 0.64 -1.67 16 4 C -0.11 -3.08 4.22 30.69 0.13 -2.95 16 5 C -0.05 -1.68 2.43 30.71 0.07 -1.60 16 6 H 0.08 2.73 6.62 -2.39 -0.02 2.72 16 7 S -0.30 -13.69 21.08 -56.49 -1.19 -14.88 16 8 C 0.08 4.22 4.72 71.24 0.34 4.55 16 9 C -0.61 -36.00 9.13 25.60 0.23 -35.77 16 10 H 0.05 3.13 7.71 -2.91 -0.02 3.10 16 11 C -0.02 -1.27 5.46 84.65 0.46 -0.81 16 12 N -0.92 -56.47 13.65 21.45 0.29 -56.18 16 13 Si 1.13 50.28 29.90 68.60 2.05 52.33 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 17 C -0.15 -4.67 5.30 30.69 0.16 -4.51 16 18 C 0.07 1.72 6.52 72.01 0.47 2.19 16 19 O -0.38 -9.89 10.24 -148.98 -1.53 -11.41 16 20 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.15 4.98 -2.39 -0.01 1.13 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.01 0.33 8.01 -2.39 -0.02 0.31 16 29 H 0.01 0.68 7.12 -2.39 -0.02 0.66 16 30 H 0.26 15.77 7.22 -92.71 -0.67 15.10 16 31 H 0.06 2.04 7.09 -2.38 -0.02 2.03 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 1.46 6.34 -2.39 -0.02 1.44 16 34 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -65.80 280.21 3.85 -61.95 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.16 Total: 9.21 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 3.06 Total: -41.02 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.29 Total: -56.18 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.53 Total: -11.41 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Atomic # 16 Polarization: -13.69 SS G_CDS: -1.19 Total: -14.88 kcal Total: -65.80 3.85 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335233147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.880 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds