Wall clock time and date at job start Sun Mar 29 2020 21:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47068 * 199.78504 * 3 2 1 5 5 C 1.34777 * 120.00403 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99740 * 0.02562 * 5 4 3 7 7 C 1.47639 * 120.00339 * 180.02562 * 5 4 3 8 8 C 1.40007 * 119.89573 * 0.24611 * 7 5 4 9 9 C 1.36318 * 120.10468 * 180.25591 * 8 7 5 10 10 C 1.40884 * 119.89177 * 359.47662 * 9 8 7 11 11 C 1.41116 * 120.10368 * 180.29746 * 10 9 8 12 12 H 1.07997 * 120.00134 * 154.53831 * 11 10 9 13 13 C 1.40227 * 119.99714 * 334.53632 * 11 10 9 14 14 N 1.30644 * 120.00033 * 343.04996 * 13 11 10 15 15 Si 1.86799 * 119.99848 * 163.05218 * 13 11 10 16 16 H 1.48501 * 109.47314 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47265 * 119.99809 * 15 13 11 18 18 H 1.48498 * 109.47305 * 239.99792 * 15 13 11 19 19 C 1.40889 * 119.79628 * 0.27580 * 10 9 8 20 20 C 1.36316 * 119.88883 * 359.97438 * 19 10 9 21 21 H 1.09000 * 109.46649 * 79.78673 * 3 2 1 22 22 H 1.08994 * 109.47438 * 319.79128 * 3 2 1 23 23 H 0.97005 * 120.00342 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95276 * 0.03420 * 8 7 5 25 25 H 1.08007 * 120.05277 * 179.74755 * 9 8 7 26 26 H 0.97005 * 119.99903 * 179.97438 * 14 13 11 27 27 H 1.08002 * 120.05358 * 180.02562 * 19 10 9 28 28 H 1.08002 * 119.94674 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3005 0.4675 5 6 4.4207 1.5331 0.5504 6 8 5.2113 0.6642 0.2367 7 6 4.9122 2.8429 1.0221 8 6 4.0000 3.8401 1.3877 9 6 4.4491 5.0529 1.8189 10 6 5.8337 5.2981 1.9068 11 6 6.3035 6.5497 2.3585 12 1 7.2797 6.6278 2.8137 13 6 5.5028 7.6921 2.2162 14 7 4.4906 7.6816 1.3903 15 14 5.8835 9.2289 3.2076 16 1 7.0719 8.9839 4.0637 17 1 6.1627 10.3574 2.2836 18 1 4.7183 9.5669 4.0639 19 6 6.7478 4.2897 1.5427 20 6 6.2892 3.0819 1.1079 21 1 2.9714 -0.1814 -1.0114 22 1 2.9718 -0.7839 0.6634 23 1 2.4651 1.9939 0.7174 24 1 2.9388 3.6496 1.3246 25 1 3.7447 5.8229 2.0968 26 1 3.9364 8.4717 1.2922 27 1 7.8101 4.4731 1.6089 28 1 6.9891 2.3084 0.8282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336022027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:12 Heat of formation + Delta-G solvation = 3.669203 kcal Electronic energy + Delta-G solvation = -14479.572605 eV Core-core repulsion = 11881.067848 eV Total energy + Delta-G solvation = -2598.504757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.30713 -37.35469 -36.69444 -34.16578 -33.92897 -30.51423 -29.51622 -28.02251 -25.59465 -22.02650 -21.02313 -19.90307 -18.44022 -17.57421 -16.18221 -15.86103 -15.43374 -15.32608 -14.08159 -13.99841 -13.65161 -13.36569 -12.94529 -12.81487 -12.54456 -12.14229 -12.07731 -11.94879 -11.44077 -11.32082 -10.99816 -10.70850 -10.10217 -9.62391 -9.42385 -9.16679 -8.91787 -7.78851 -7.60909 -7.08813 -4.66626 2.12860 2.31567 2.57388 2.86485 2.92401 2.97504 2.98292 3.61383 3.69664 3.75646 3.93873 4.49071 5.30831 5.32422 5.51215 5.91141 5.98022 6.25170 6.58309 6.71818 6.77164 6.95944 7.06147 7.28426 7.37294 7.55158 7.69857 7.80282 7.99482 8.03008 8.34158 8.57207 8.68687 8.86148 9.83051 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040102 B = 0.005563 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.058520 B = 5032.392525 C = 5650.213927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.201 3.799 3 C 0.220 3.780 4 N -0.743 5.743 5 C 0.579 3.421 6 O -0.569 6.569 7 C -0.286 4.286 8 C -0.062 4.062 9 C -0.177 4.177 10 C 0.129 3.871 11 C -0.440 4.440 12 H 0.086 0.914 13 C 0.073 3.927 14 N -0.770 5.770 15 Si 0.914 3.086 16 H -0.257 1.257 17 H -0.271 1.271 18 H -0.269 1.269 19 C -0.239 4.239 20 C -0.019 4.019 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.404 0.596 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.287 0.713 27 H 0.099 0.901 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -3.876 0.179 4.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.117 4.117 3 C 0.093 3.907 4 N -0.399 5.399 5 C 0.375 3.625 6 O -0.450 6.450 7 C -0.291 4.291 8 C -0.082 4.082 9 C -0.196 4.196 10 C 0.126 3.874 11 C -0.467 4.467 12 H 0.104 0.896 13 C -0.148 4.148 14 N -0.393 5.393 15 Si 0.737 3.263 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.194 1.194 19 C -0.258 4.258 20 C -0.038 4.038 21 H 0.127 0.873 22 H 0.127 0.873 23 H 0.239 0.761 24 H 0.107 0.893 25 H 0.138 0.862 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.274 -4.354 -0.158 5.450 hybrid contribution 0.074 1.114 0.408 1.188 sum -3.200 -3.240 0.250 4.561 Atomic orbital electron populations 1.81230 1.12843 1.06803 1.08915 1.29239 0.95239 0.94116 0.93123 1.18535 0.79349 0.89317 1.03494 1.45844 1.08501 1.14541 1.71059 1.18570 0.80021 0.88198 0.75756 1.90663 1.55116 1.47330 1.51924 1.18777 0.94281 0.93822 1.22229 1.20476 0.96161 0.93792 0.97734 1.20982 0.96147 0.95954 1.06557 1.17811 0.91722 0.92084 0.85798 1.19912 1.02639 0.91707 1.32452 0.89576 1.26117 0.93695 1.01398 0.93617 1.69741 1.13264 1.30811 1.25515 0.86155 0.80033 0.79869 0.80222 1.18019 1.19635 1.19370 1.20734 0.98181 0.95443 1.11448 1.20358 0.93414 0.95711 0.94341 0.87299 0.87301 0.76061 0.89325 0.86192 0.90199 0.88269 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.92 18.54 42.15 0.78 -5.14 15 2 C 0.20 2.36 15.55 -20.76 -0.32 2.03 15 3 C 0.22 2.40 6.15 -6.83 -0.04 2.35 15 4 N -0.74 -10.71 5.49 -64.19 -0.35 -11.07 15 5 C 0.58 10.94 7.76 -12.42 -0.10 10.84 15 6 O -0.57 -11.93 16.32 5.29 0.09 -11.85 15 7 C -0.29 -6.08 5.89 -104.73 -0.62 -6.70 15 8 C -0.06 -1.31 9.47 -39.61 -0.38 -1.68 15 9 C -0.18 -4.17 8.63 -39.27 -0.34 -4.51 15 10 C 0.13 3.17 5.57 -106.80 -0.59 2.57 15 11 C -0.44 -10.59 9.05 -37.74 -0.34 -10.93 15 12 H 0.09 1.98 7.90 -52.49 -0.41 1.57 15 13 C 0.07 1.66 5.15 -17.31 -0.09 1.57 15 14 N -0.77 -17.98 10.95 55.56 0.61 -17.37 15 15 Si 0.91 16.83 29.59 -169.99 -5.03 11.80 15 16 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 17 H -0.27 -4.95 7.11 56.52 0.40 -4.54 15 18 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 19 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 15 20 C -0.02 -0.42 9.52 -39.61 -0.38 -0.80 15 21 H 0.11 1.07 8.14 -51.93 -0.42 0.64 15 22 H 0.11 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.40 5.44 6.45 -40.82 -0.26 5.18 15 24 H 0.09 1.57 6.37 -52.49 -0.33 1.23 15 25 H 0.12 2.89 6.18 -52.48 -0.32 2.56 15 26 H 0.29 6.01 8.29 -40.82 -0.34 5.67 15 27 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 28 H 0.10 2.17 7.63 -52.49 -0.40 1.77 15 LS Contribution 261.85 15.07 3.95 3.95 Total: -1.00 -27.51 261.85 -5.68 -33.18 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -2.14 Total: 7.64 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.58 Total: -11.14 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 1.04 Total: -33.58 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.51 -5.68 -33.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336022027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.853 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds