Wall clock time and date at job start Sun Mar 29 2020 21:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47068 * 199.78504 * 3 2 1 5 5 C 1.34777 * 120.00403 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99740 * 0.02562 * 5 4 3 7 7 C 1.47639 * 120.00339 * 180.02562 * 5 4 3 8 8 C 1.40007 * 119.89573 * 0.24611 * 7 5 4 9 9 C 1.36318 * 120.10468 * 180.25591 * 8 7 5 10 10 C 1.40884 * 119.89177 * 359.47662 * 9 8 7 11 11 C 1.41116 * 120.10368 * 180.29746 * 10 9 8 12 12 H 1.07997 * 120.00134 * 154.53831 * 11 10 9 13 13 C 1.40227 * 119.99714 * 334.53632 * 11 10 9 14 14 N 1.30644 * 120.00033 * 343.04996 * 13 11 10 15 15 Si 1.86799 * 119.99848 * 163.05218 * 13 11 10 16 16 H 1.48501 * 109.47314 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47265 * 119.99809 * 15 13 11 18 18 H 1.48498 * 109.47305 * 239.99792 * 15 13 11 19 19 C 1.40889 * 119.79628 * 0.27580 * 10 9 8 20 20 C 1.36316 * 119.88883 * 359.97438 * 19 10 9 21 21 H 1.09000 * 109.46649 * 79.78673 * 3 2 1 22 22 H 1.08994 * 109.47438 * 319.79128 * 3 2 1 23 23 H 0.97005 * 120.00342 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95276 * 0.03420 * 8 7 5 25 25 H 1.08007 * 120.05277 * 179.74755 * 9 8 7 26 26 H 0.97005 * 119.99903 * 179.97438 * 14 13 11 27 27 H 1.08002 * 120.05358 * 180.02562 * 19 10 9 28 28 H 1.08002 * 119.94674 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3005 0.4675 5 6 4.4207 1.5331 0.5504 6 8 5.2113 0.6642 0.2367 7 6 4.9122 2.8429 1.0221 8 6 4.0000 3.8401 1.3877 9 6 4.4491 5.0529 1.8189 10 6 5.8337 5.2981 1.9068 11 6 6.3035 6.5497 2.3585 12 1 7.2797 6.6278 2.8137 13 6 5.5028 7.6921 2.2162 14 7 4.4906 7.6816 1.3903 15 14 5.8835 9.2289 3.2076 16 1 7.0719 8.9839 4.0637 17 1 6.1627 10.3574 2.2836 18 1 4.7183 9.5669 4.0639 19 6 6.7478 4.2897 1.5427 20 6 6.2892 3.0819 1.1079 21 1 2.9714 -0.1814 -1.0114 22 1 2.9718 -0.7839 0.6634 23 1 2.4651 1.9939 0.7174 24 1 2.9388 3.6496 1.3246 25 1 3.7447 5.8229 2.0968 26 1 3.9364 8.4717 1.2922 27 1 7.8101 4.4731 1.6089 28 1 6.9891 2.3084 0.8282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336022027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:12 Heat of formation + Delta-G solvation = -12.860568 kcal Electronic energy + Delta-G solvation = -14480.289390 eV Core-core repulsion = 11881.067848 eV Total energy + Delta-G solvation = -2599.221542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79777 -38.95516 -37.85329 -35.63888 -35.44728 -32.16845 -31.26113 -29.31181 -27.20847 -23.64266 -22.75815 -21.34503 -19.72150 -19.31575 -17.58938 -17.33900 -16.74488 -16.51381 -15.71124 -15.44766 -15.03562 -14.98677 -14.45761 -14.01865 -13.89505 -13.67265 -13.45854 -13.24677 -13.03534 -12.84339 -12.58142 -12.35069 -11.73695 -11.33681 -11.11498 -10.74806 -10.16411 -9.53298 -9.36837 -8.77130 -6.46093 0.46595 1.19577 1.28243 1.39539 1.42911 1.55925 1.63582 2.13917 2.19133 2.54096 2.81137 2.88017 3.72727 4.22750 4.34954 4.48883 4.50685 4.63068 4.97245 5.05903 5.19187 5.32995 5.38058 5.62510 5.84909 5.96217 6.03143 6.26810 6.34704 6.57223 6.60681 6.80534 6.92036 7.38962 8.17913 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040102 B = 0.005563 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.058520 B = 5032.392525 C = 5650.213927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.230 3.770 3 C 0.223 3.777 4 N -0.730 5.730 5 C 0.586 3.414 6 O -0.588 6.588 7 C -0.290 4.290 8 C -0.055 4.055 9 C -0.200 4.200 10 C 0.102 3.898 11 C -0.475 4.475 12 H 0.085 0.915 13 C 0.038 3.962 14 N -0.800 5.800 15 Si 0.985 3.015 16 H -0.257 1.257 17 H -0.265 1.265 18 H -0.262 1.262 19 C -0.253 4.253 20 C -0.029 4.029 21 H 0.130 0.870 22 H 0.132 0.868 23 H 0.410 0.590 24 H 0.123 0.877 25 H 0.110 0.890 26 H 0.296 0.704 27 H 0.104 0.896 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -4.381 0.160 5.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.088 4.088 3 C 0.097 3.903 4 N -0.385 5.385 5 C 0.380 3.620 6 O -0.471 6.471 7 C -0.295 4.295 8 C -0.074 4.074 9 C -0.219 4.219 10 C 0.098 3.902 11 C -0.502 4.502 12 H 0.103 0.897 13 C -0.181 4.181 14 N -0.424 5.424 15 Si 0.805 3.195 16 H -0.180 1.180 17 H -0.190 1.190 18 H -0.186 1.186 19 C -0.273 4.273 20 C -0.048 4.048 21 H 0.148 0.852 22 H 0.149 0.851 23 H 0.247 0.753 24 H 0.141 0.859 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.968 -4.880 -0.186 6.292 hybrid contribution 0.243 1.114 0.345 1.191 sum -3.725 -3.766 0.159 5.299 Atomic orbital electron populations 1.81281 1.14065 1.07973 1.10427 1.29169 0.94940 0.92898 0.91774 1.18803 0.78538 0.87788 1.05124 1.45620 1.07057 1.16117 1.69677 1.18111 0.81282 0.86951 0.75692 1.90662 1.56114 1.47543 1.52801 1.19129 0.94082 0.95181 1.21064 1.20747 0.97963 0.92639 0.96022 1.21008 0.95755 0.96921 1.08237 1.18149 0.92583 0.92832 0.86593 1.20136 1.03379 0.92606 1.34086 0.89738 1.26891 0.93247 1.03924 0.94063 1.69763 1.14096 1.32152 1.26374 0.85096 0.79821 0.75924 0.78618 1.18009 1.18973 1.18639 1.20889 0.98483 0.95876 1.12031 1.20543 0.94414 0.95543 0.94276 0.85234 0.85076 0.75340 0.85948 0.87218 0.89330 0.87791 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.98 18.54 20.01 0.37 -11.61 15 2 C 0.23 4.71 15.55 89.44 1.39 6.10 15 3 C 0.22 4.02 6.15 84.58 0.52 4.54 15 4 N -0.73 -18.65 5.49 -475.26 -2.61 -21.26 15 5 C 0.59 20.67 7.76 86.73 0.67 21.35 15 6 O -0.59 -23.21 16.32 -4.00 -0.07 -23.28 15 7 C -0.29 -11.94 5.89 -19.93 -0.12 -12.06 15 8 C -0.05 -2.24 9.47 22.25 0.21 -2.03 15 9 C -0.20 -9.51 8.63 22.47 0.19 -9.32 15 10 C 0.10 5.10 5.57 -21.28 -0.12 4.98 15 11 C -0.47 -23.46 9.05 23.46 0.21 -23.25 15 12 H 0.08 4.02 7.90 -2.91 -0.02 4.00 15 13 C 0.04 1.71 5.15 85.35 0.44 2.15 15 14 N -0.80 -37.74 10.95 21.87 0.24 -37.50 15 15 Si 0.99 34.41 29.59 68.60 2.03 36.44 15 16 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 17 H -0.27 -8.92 7.11 99.48 0.71 -8.21 15 18 H -0.26 -8.78 7.11 99.48 0.71 -8.07 15 19 C -0.25 -11.93 9.73 22.47 0.22 -11.71 15 20 C -0.03 -1.26 9.52 22.25 0.21 -1.05 15 21 H 0.13 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.13 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.41 9.68 6.45 -92.70 -0.60 9.08 15 24 H 0.12 4.04 6.37 -2.91 -0.02 4.02 15 25 H 0.11 5.38 6.18 -2.91 -0.02 5.36 15 26 H 0.30 12.40 8.29 -92.70 -0.77 11.63 15 27 H 0.10 4.61 8.06 -2.91 -0.02 4.59 15 28 H 0.11 4.62 7.63 -2.91 -0.02 4.59 15 Total: -1.00 -59.15 261.85 4.41 -54.74 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.61 Total: 22.76 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.84 Total: -20.29 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -2.00 Total: -70.37 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -59.15 4.41 -54.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336022027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.881 kcal (2) G-P(sol) polarization free energy of solvation -59.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds