Wall clock time and date at job start Sun Mar 29 2020 21:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47319 * 318.69999 * 3 2 1 5 5 C 1.34770 * 120.00169 * 180.02562 * 4 3 2 6 6 O 1.21542 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.47896 * 120.00001 * 179.97438 * 5 4 3 8 8 C 1.39913 * 120.02306 * 359.72311 * 7 5 4 9 9 C 1.38328 * 120.36017 * 179.74269 * 8 7 5 10 10 C 1.37756 * 120.40789 * 0.55789 * 9 8 7 11 11 C 1.40751 * 120.03951 * 359.69517 * 10 9 8 12 12 C 1.41433 * 120.18010 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00597 * 150.17615 * 12 11 10 14 14 C 1.39942 * 119.99928 * 330.17939 * 12 11 10 15 15 N 1.30828 * 120.00171 * 161.73111 * 14 12 11 16 16 Si 1.86800 * 119.99948 * 341.73117 * 14 12 11 17 17 H 1.48495 * 109.47170 * 95.41176 * 16 14 12 18 18 H 1.48502 * 109.47218 * 215.41327 * 16 14 12 19 19 H 1.48503 * 109.47144 * 335.41068 * 16 14 12 20 20 C 1.38991 * 120.02555 * 179.97438 * 7 5 4 21 21 H 1.08998 * 109.47245 * 78.69570 * 3 2 1 22 22 H 1.09000 * 109.47174 * 198.70065 * 3 2 1 23 23 H 0.97008 * 119.99724 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.82189 * 359.97438 * 8 7 5 25 25 H 1.07996 * 119.80235 * 180.27590 * 9 8 7 26 26 H 1.08001 * 119.98479 * 179.72554 * 10 9 8 27 27 H 0.96998 * 120.00196 * 180.02562 * 15 14 12 28 28 H 1.08004 * 120.19927 * 359.96314 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.0368 0.9116 5 6 4.4220 -1.2209 1.0745 6 8 5.2114 -0.5265 0.4648 7 6 4.9154 -2.2678 1.9953 8 6 4.0070 -3.0635 2.7018 9 6 4.4608 -4.0483 3.5607 10 6 5.8119 -4.2494 3.7392 11 6 6.7408 -3.4551 3.0410 12 6 8.1286 -3.6594 3.2217 13 1 8.8152 -3.4468 2.4155 14 6 8.6121 -4.1371 4.4449 15 7 9.8087 -4.6614 4.5156 16 14 7.5492 -4.0259 5.9770 17 1 6.8294 -5.3097 6.1742 18 1 8.4086 -3.7539 7.1571 19 1 6.5646 -2.9257 5.8176 20 6 6.2819 -2.4584 2.1633 21 1 2.9714 -0.2006 -1.0077 22 1 2.9709 0.9742 0.3295 23 1 2.4667 -1.5908 1.3985 24 1 2.9457 -2.9106 2.5730 25 1 3.7517 -4.6603 4.0982 26 1 6.1587 -5.0173 4.4149 27 1 10.1437 -4.9928 5.3634 28 1 6.9867 -1.8441 1.6225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336125792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:26 Heat of formation + Delta-G solvation = 9.437209 kcal Electronic energy + Delta-G solvation = -14565.477440 eV Core-core repulsion = 11967.222802 eV Total energy + Delta-G solvation = -2598.254637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67813 -37.55599 -36.88445 -34.47801 -33.72302 -30.93864 -30.14836 -28.03534 -25.21545 -22.98699 -20.79560 -20.27918 -18.92896 -17.30768 -16.29388 -16.09061 -15.66178 -15.30065 -14.74366 -13.95043 -13.93389 -13.75634 -13.08714 -12.87102 -12.79236 -12.67534 -12.27838 -12.03887 -11.66804 -11.11411 -10.85330 -10.61304 -10.07975 -9.80546 -9.58448 -9.25277 -9.18713 -7.95248 -7.83247 -7.05681 -4.60964 1.79050 2.13236 2.43440 2.45507 3.01873 3.14034 3.21452 3.38844 3.47518 3.70744 3.88524 4.41202 5.07070 5.14896 5.26564 5.43234 5.79570 5.94738 6.27525 6.32030 6.58875 6.60919 6.90230 7.10681 7.15753 7.31332 7.42469 7.55696 7.69747 7.89106 8.22572 8.44211 8.47553 8.65553 9.96207 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.049751 B = 0.005868 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.664795 B = 4770.255949 C = 5138.568440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.200 3.800 3 C 0.218 3.782 4 N -0.736 5.736 5 C 0.572 3.428 6 O -0.540 6.540 7 C -0.109 4.109 8 C -0.217 4.217 9 C -0.082 4.082 10 C -0.221 4.221 11 C 0.081 3.919 12 C -0.441 4.441 13 H 0.095 0.905 14 C 0.083 3.917 15 N -0.801 5.801 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.243 1.243 20 C -0.133 4.133 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.407 0.593 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.287 0.713 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.332 3.966 -2.204 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.119 4.119 3 C 0.091 3.909 4 N -0.392 5.392 5 C 0.363 3.637 6 O -0.417 6.417 7 C -0.112 4.112 8 C -0.237 4.237 9 C -0.100 4.100 10 C -0.240 4.240 11 C 0.078 3.922 12 C -0.469 4.469 13 H 0.113 0.887 14 C -0.137 4.137 15 N -0.425 5.425 16 Si 0.737 3.263 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.166 1.166 20 C -0.153 4.153 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.243 0.757 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.182 4.374 -2.556 11.372 hybrid contribution -0.246 -0.391 0.992 1.094 sum -10.427 3.983 -1.564 11.271 Atomic orbital electron populations 1.81251 1.12774 1.07468 1.07836 1.29147 0.95143 0.93878 0.93703 1.18594 0.79588 0.95091 0.97588 1.45847 1.08272 1.37960 1.47156 1.18766 0.80499 0.83196 0.81250 1.90730 1.55147 1.47629 1.48183 1.19310 0.94877 0.97509 0.99553 1.20378 0.96417 1.02093 1.04851 1.20517 0.95177 0.96900 0.97448 1.21200 0.93057 1.03008 1.06756 1.17695 0.93656 0.89704 0.91144 1.19534 0.91592 1.35942 0.99818 0.88747 1.26185 0.95323 0.90769 1.01419 1.69687 1.17642 1.26450 1.28686 0.86308 0.80048 0.80824 0.79117 1.19545 1.21608 1.16637 1.21274 0.92734 0.98727 1.02569 0.86896 0.86906 0.75681 0.88607 0.88231 0.87841 0.90241 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.22 18.54 42.15 0.78 -4.44 15 2 C 0.20 2.00 15.55 -20.76 -0.32 1.68 15 3 C 0.22 1.98 6.15 -6.83 -0.04 1.93 15 4 N -0.74 -8.99 5.49 -64.11 -0.35 -9.34 15 5 C 0.57 9.72 7.77 -12.31 -0.10 9.63 15 6 O -0.54 -10.50 16.33 5.33 0.09 -10.42 15 7 C -0.11 -2.14 5.87 -105.04 -0.62 -2.75 15 8 C -0.22 -3.91 9.55 -38.92 -0.37 -4.28 15 9 C -0.08 -1.59 10.01 -39.72 -0.40 -1.99 15 10 C -0.22 -4.93 7.17 -38.81 -0.28 -5.21 15 11 C 0.08 1.95 5.10 -106.87 -0.55 1.40 15 12 C -0.44 -11.41 9.57 -37.73 -0.36 -11.77 15 13 H 0.09 2.57 8.06 -52.48 -0.42 2.14 15 14 C 0.08 2.08 5.40 -17.34 -0.09 1.98 15 15 N -0.80 -20.54 13.93 55.55 0.77 -19.76 15 16 Si 0.91 19.71 24.52 -169.99 -4.17 15.54 15 17 H -0.27 -5.61 6.71 56.52 0.38 -5.23 15 18 H -0.29 -6.06 7.11 56.52 0.40 -5.66 15 19 H -0.24 -5.37 6.86 56.52 0.39 -4.98 15 20 C -0.13 -2.99 9.34 -38.44 -0.36 -3.35 15 21 H 0.11 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.11 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.41 4.44 6.47 -40.82 -0.26 4.17 15 24 H 0.10 1.37 6.38 -52.49 -0.33 1.03 15 25 H 0.10 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.10 2.30 4.72 -52.49 -0.25 2.06 15 27 H 0.29 6.64 8.30 -40.82 -0.34 6.30 15 28 H 0.12 2.67 7.64 -52.48 -0.40 2.27 15 LS Contribution 256.85 15.07 3.87 3.87 Total: -1.00 -28.42 256.85 -4.60 -33.02 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.11 Total: 4.26 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -3.48 Total: -12.73 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 1.20 Total: -33.54 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.17 Total: 15.54 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.42 -4.60 -33.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336125792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.454 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds