Wall clock time and date at job start Sun Mar 29 2020 21:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47319 * 318.69999 * 3 2 1 5 5 C 1.34770 * 120.00169 * 180.02562 * 4 3 2 6 6 O 1.21542 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.47896 * 120.00001 * 179.97438 * 5 4 3 8 8 C 1.39913 * 120.02306 * 359.72311 * 7 5 4 9 9 C 1.38328 * 120.36017 * 179.74269 * 8 7 5 10 10 C 1.37756 * 120.40789 * 0.55789 * 9 8 7 11 11 C 1.40751 * 120.03951 * 359.69517 * 10 9 8 12 12 C 1.41433 * 120.18010 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00597 * 150.17615 * 12 11 10 14 14 C 1.39942 * 119.99928 * 330.17939 * 12 11 10 15 15 N 1.30828 * 120.00171 * 161.73111 * 14 12 11 16 16 Si 1.86800 * 119.99948 * 341.73117 * 14 12 11 17 17 H 1.48495 * 109.47170 * 95.41176 * 16 14 12 18 18 H 1.48502 * 109.47218 * 215.41327 * 16 14 12 19 19 H 1.48503 * 109.47144 * 335.41068 * 16 14 12 20 20 C 1.38991 * 120.02555 * 179.97438 * 7 5 4 21 21 H 1.08998 * 109.47245 * 78.69570 * 3 2 1 22 22 H 1.09000 * 109.47174 * 198.70065 * 3 2 1 23 23 H 0.97008 * 119.99724 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.82189 * 359.97438 * 8 7 5 25 25 H 1.07996 * 119.80235 * 180.27590 * 9 8 7 26 26 H 1.08001 * 119.98479 * 179.72554 * 10 9 8 27 27 H 0.96998 * 120.00196 * 180.02562 * 15 14 12 28 28 H 1.08004 * 120.19927 * 359.96314 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.0368 0.9116 5 6 4.4220 -1.2209 1.0745 6 8 5.2114 -0.5265 0.4648 7 6 4.9154 -2.2678 1.9953 8 6 4.0070 -3.0635 2.7018 9 6 4.4608 -4.0483 3.5607 10 6 5.8119 -4.2494 3.7392 11 6 6.7408 -3.4551 3.0410 12 6 8.1286 -3.6594 3.2217 13 1 8.8152 -3.4468 2.4155 14 6 8.6121 -4.1371 4.4449 15 7 9.8087 -4.6614 4.5156 16 14 7.5492 -4.0259 5.9770 17 1 6.8294 -5.3097 6.1742 18 1 8.4086 -3.7539 7.1571 19 1 6.5646 -2.9257 5.8176 20 6 6.2819 -2.4584 2.1633 21 1 2.9714 -0.2006 -1.0077 22 1 2.9709 0.9742 0.3295 23 1 2.4667 -1.5908 1.3985 24 1 2.9457 -2.9106 2.5730 25 1 3.7517 -4.6603 4.0982 26 1 6.1587 -5.0173 4.4149 27 1 10.1437 -4.9928 5.3634 28 1 6.9867 -1.8441 1.6225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336125792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:26 Heat of formation + Delta-G solvation = -10.199988 kcal Electronic energy + Delta-G solvation = -14566.328972 eV Core-core repulsion = 11967.222802 eV Total energy + Delta-G solvation = -2599.106170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03732 -39.10046 -37.89199 -35.69861 -35.42196 -32.58417 -31.77205 -29.14462 -26.96564 -24.48237 -22.44912 -21.65837 -20.22327 -18.76321 -17.84697 -17.37972 -16.68827 -16.61903 -16.39906 -15.46406 -15.25418 -15.12096 -14.55259 -14.41230 -14.01771 -13.81619 -13.55891 -13.31838 -13.09023 -12.81235 -12.63521 -12.28018 -11.73973 -11.52917 -11.19959 -10.86836 -10.28084 -9.59146 -9.53329 -8.88744 -6.51821 0.20671 0.77882 1.22915 1.28153 1.44057 1.50611 1.64580 1.97198 2.14327 2.41216 2.68295 2.84060 3.49225 3.89544 4.29494 4.44903 4.46457 4.53284 4.65810 4.92011 4.96057 5.17187 5.22962 5.45773 5.67252 5.75650 5.88938 6.11889 6.32442 6.35882 6.48912 6.68867 6.78047 7.17006 8.20007 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.049751 B = 0.005868 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.664795 B = 4770.255949 C = 5138.568440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.231 3.769 3 C 0.221 3.779 4 N -0.716 5.716 5 C 0.577 3.423 6 O -0.568 6.568 7 C -0.113 4.113 8 C -0.182 4.182 9 C -0.085 4.085 10 C -0.227 4.227 11 C 0.064 3.936 12 C -0.487 4.487 13 H 0.052 0.948 14 C 0.044 3.956 15 N -0.850 5.850 16 Si 0.967 3.033 17 H -0.251 1.251 18 H -0.280 1.280 19 H -0.249 1.249 20 C -0.160 4.160 21 H 0.133 0.867 22 H 0.133 0.867 23 H 0.417 0.583 24 H 0.148 0.852 25 H 0.143 0.857 26 H 0.103 0.897 27 H 0.294 0.706 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.294 4.279 -1.699 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.087 4.087 3 C 0.095 3.905 4 N -0.371 5.371 5 C 0.366 3.634 6 O -0.448 6.448 7 C -0.116 4.116 8 C -0.202 4.202 9 C -0.103 4.103 10 C -0.246 4.246 11 C 0.061 3.939 12 C -0.516 4.516 13 H 0.071 0.929 14 C -0.170 4.170 15 N -0.476 5.476 16 Si 0.789 3.211 17 H -0.175 1.175 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.181 4.181 21 H 0.151 0.849 22 H 0.151 0.849 23 H 0.255 0.745 24 H 0.166 0.834 25 H 0.161 0.839 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.194 4.684 -2.062 15.089 hybrid contribution 0.724 -0.397 0.655 1.054 sum -13.470 4.287 -1.408 14.205 Atomic orbital electron populations 1.81310 1.14028 1.08841 1.09266 1.29047 0.94783 0.92551 0.92352 1.18843 0.78748 0.94945 0.97932 1.45564 1.06556 1.38161 1.46836 1.18283 0.81826 0.82498 0.80763 1.90735 1.56400 1.48496 1.49180 1.19629 0.93890 0.98275 0.99795 1.21011 0.98716 0.99130 1.01333 1.21023 0.94436 0.97400 0.97472 1.21392 0.94393 1.02547 1.06270 1.17782 0.93160 0.90625 0.92290 1.19473 0.92429 1.39767 0.99978 0.92938 1.26896 0.96450 0.90142 1.03533 1.69728 1.19360 1.28792 1.29716 0.85473 0.78588 0.81144 0.75888 1.17548 1.20657 1.17227 1.21230 0.94374 0.99091 1.03357 0.84936 0.84940 0.74492 0.83401 0.83949 0.87925 0.89546 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.05 18.54 20.01 0.37 -9.68 15 2 C 0.23 3.71 15.55 89.44 1.39 5.10 15 3 C 0.22 3.01 6.15 84.57 0.52 3.53 15 4 N -0.72 -14.10 5.49 -475.02 -2.61 -16.71 15 5 C 0.58 17.86 7.77 86.80 0.67 18.53 15 6 O -0.57 -21.22 16.33 -3.85 -0.06 -21.28 15 7 C -0.11 -4.13 5.87 -20.13 -0.12 -4.24 15 8 C -0.18 -5.61 9.55 22.70 0.22 -5.39 15 9 C -0.09 -2.91 10.01 22.18 0.22 -2.69 15 10 C -0.23 -9.74 7.17 22.77 0.16 -9.58 15 11 C 0.06 3.15 5.10 -21.32 -0.11 3.04 15 12 C -0.49 -27.08 9.57 23.47 0.22 -26.85 15 13 H 0.05 3.20 8.06 -2.91 -0.02 3.17 15 14 C 0.04 2.32 5.40 85.26 0.46 2.78 15 15 N -0.85 -46.14 13.93 21.83 0.30 -45.84 15 16 Si 0.97 40.77 24.52 68.60 1.68 42.46 15 17 H -0.25 -9.70 6.71 99.48 0.67 -9.03 15 18 H -0.28 -11.24 7.11 99.48 0.71 -10.53 15 19 H -0.25 -10.55 6.86 99.48 0.68 -9.87 15 20 C -0.16 -7.34 9.34 23.01 0.21 -7.13 15 21 H 0.13 1.49 8.14 -2.39 -0.02 1.48 15 22 H 0.13 1.50 8.14 -2.39 -0.02 1.48 15 23 H 0.42 6.58 6.47 -92.70 -0.60 5.98 15 24 H 0.15 3.06 6.38 -2.91 -0.02 3.04 15 25 H 0.14 3.72 8.06 -2.91 -0.02 3.70 15 26 H 0.10 4.40 4.72 -2.91 -0.01 4.39 15 27 H 0.29 14.27 8.30 -92.71 -0.77 13.50 15 28 H 0.10 4.71 7.64 -2.91 -0.02 4.69 15 Total: -1.00 -66.05 256.85 4.10 -61.95 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.55 Total: 12.00 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.86 Total: -22.91 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -1.93 Total: -72.22 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.28 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.68 Total: 42.46 kcal Total: -66.05 4.10 -61.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336125792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.751 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds