Wall clock time and date at job start Sun Mar 29 2020 21:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30119 * 126.16661 * 2 1 4 4 O 1.21281 * 110.51298 * 179.83910 * 3 2 1 5 5 C 1.34303 * 109.66294 * 0.42699 * 4 3 2 6 6 C 1.47424 * 126.69511 * 179.76178 * 5 4 3 7 7 C 1.40137 * 119.89829 * 179.69856 * 6 5 4 8 8 C 1.36202 * 120.09546 * 179.71502 * 7 6 5 9 9 C 1.40968 * 119.90264 * 0.55871 * 8 7 6 10 10 C 1.40953 * 120.10196 * 179.69608 * 9 8 7 11 11 H 1.08006 * 120.00050 * 24.72261 * 10 9 8 12 12 C 1.40150 * 120.00299 * 204.72210 * 10 9 8 13 13 N 1.30700 * 119.99804 * 17.92182 * 12 10 9 14 14 Si 1.86802 * 120.00171 * 197.92361 * 12 10 9 15 15 H 1.48500 * 109.47429 * 60.00127 * 14 12 10 16 16 H 1.48503 * 109.46767 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47299 * 299.99636 * 14 12 10 18 18 C 1.40969 * 119.79929 * 359.71420 * 9 8 7 19 19 C 1.36202 * 119.89985 * 0.02562 * 18 9 8 20 20 N 1.32312 * 106.60807 * 359.73530 * 5 4 3 21 21 H 1.09002 * 109.47337 * 269.69193 * 1 2 3 22 22 H 1.09000 * 109.47074 * 29.69254 * 1 2 3 23 23 H 1.08998 * 109.47549 * 149.69009 * 1 2 3 24 24 H 1.07993 * 119.94995 * 359.97438 * 7 6 5 25 25 H 1.08007 * 120.04722 * 180.29405 * 8 7 6 26 26 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 27 27 H 1.08004 * 120.05035 * 179.97438 * 18 9 8 28 28 H 1.07997 * 119.94802 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0505 0.0000 4 8 3.4427 0.7232 0.0032 5 6 3.5366 -0.6165 -0.0038 6 6 4.7774 -1.4126 -0.0078 7 6 4.7093 -2.8123 -0.0087 8 6 5.8531 -3.5518 -0.0183 9 6 7.1067 -2.9071 -0.0153 10 6 8.2930 -3.6683 -0.0187 11 1 8.2888 -4.6732 -0.4144 12 6 9.4782 -3.1211 0.4914 13 7 9.4313 -2.0757 1.2744 14 14 11.1249 -3.8859 0.0522 15 1 11.3142 -3.8421 -1.4200 16 1 12.2158 -3.1260 0.7139 17 1 11.1539 -5.2972 0.5132 18 6 7.1703 -1.4989 -0.0086 19 6 6.0214 -0.7674 -0.0044 20 7 2.2982 -1.0824 -0.0058 21 1 -0.3634 -0.0055 1.0277 22 1 -0.3633 0.8927 -0.5090 23 1 -0.3634 -0.8872 -0.5186 24 1 3.7485 -3.3054 -0.0061 25 1 5.7996 -4.6305 -0.0238 26 1 10.2515 -1.6972 1.6278 27 1 8.1286 -1.0008 -0.0059 28 1 6.0692 0.3115 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336518869.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:40 Heat of formation + Delta-G solvation = 57.197257 kcal Electronic energy + Delta-G solvation = -14746.459262 eV Core-core repulsion = 12150.275656 eV Total energy + Delta-G solvation = -2596.183606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.18600 -39.57765 -36.85396 -35.98926 -33.96298 -31.78495 -31.29396 -29.88133 -27.74284 -24.84267 -23.69342 -22.68268 -21.66690 -19.40275 -18.88605 -18.51676 -17.38217 -16.77827 -15.80527 -15.42642 -14.81230 -14.51180 -14.39478 -14.04058 -13.92725 -13.71019 -13.29242 -13.15158 -12.89092 -12.75906 -12.40345 -12.19467 -11.89941 -11.68680 -11.40506 -11.29907 -10.88083 -9.63958 -9.31453 -8.84922 -6.50419 -0.19371 0.91099 1.14222 1.38828 1.43556 1.54722 1.72991 2.03672 2.15615 2.63328 2.94230 3.27911 3.61017 4.23534 4.35606 4.40606 4.61658 4.64674 4.76236 4.93596 4.98691 5.09622 5.13101 5.18241 5.28114 5.55065 5.78184 5.94128 5.97843 6.14057 6.47792 6.69720 6.80943 7.33804 8.08678 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.074762 B = 0.005401 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.430275 B = 5183.223025 C = 5478.993573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.169 3.831 3 N -0.435 5.435 4 O 0.034 5.966 5 C 0.271 3.729 6 C -0.211 4.211 7 C -0.019 4.019 8 C -0.243 4.243 9 C 0.103 3.897 10 C -0.451 4.451 11 H 0.097 0.903 12 C 0.035 3.965 13 N -0.789 5.789 14 Si 0.990 3.010 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.255 1.255 18 C -0.193 4.193 19 C -0.053 4.053 20 N -0.540 5.540 21 H 0.102 0.898 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.300 0.700 27 H 0.116 0.884 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 0.100 -1.534 4.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 N -0.156 5.156 4 O -0.014 6.014 5 C 0.062 3.938 6 C -0.216 4.216 7 C -0.038 4.038 8 C -0.262 4.262 9 C 0.099 3.901 10 C -0.477 4.477 11 H 0.115 0.885 12 C -0.186 4.186 13 N -0.412 5.412 14 Si 0.810 3.190 15 H -0.181 1.181 16 H -0.191 1.191 17 H -0.178 1.178 18 C -0.212 4.212 19 C -0.073 4.073 20 N -0.277 5.277 21 H 0.121 0.879 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.136 0.864 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.133 0.867 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.704 0.793 -1.372 4.964 hybrid contribution 0.891 -0.072 0.066 0.896 sum -3.813 0.721 -1.307 4.094 Atomic orbital electron populations 1.20306 0.79979 1.05604 1.05410 1.26646 1.02160 0.83421 0.98193 1.74472 0.89394 1.24876 1.26862 1.85292 1.22499 1.24812 1.68788 1.26677 0.94882 0.80865 0.91392 1.16799 0.85812 0.91621 1.27354 1.20448 0.98082 0.91300 0.94011 1.20870 0.91809 0.99005 1.14561 1.18181 0.93250 0.92762 0.85916 1.20233 0.93295 1.01788 1.32413 0.88526 1.27038 1.05330 0.94512 0.91690 1.69782 1.33274 1.18709 1.19409 0.85101 0.74548 0.79430 0.79953 1.18106 1.19054 1.17848 1.20953 0.97024 0.94173 1.09049 1.20627 0.91481 0.98720 0.96485 1.72138 0.99296 1.29238 1.27015 0.87911 0.88201 0.88060 0.86434 0.86406 0.88841 0.86652 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.24 10.51 71.23 0.75 -0.49 15 2 C 0.17 6.04 8.19 138.54 1.14 7.18 15 3 N -0.43 -17.19 12.15 -58.27 -0.71 -17.90 15 4 O 0.03 1.45 11.12 68.67 0.76 2.22 15 5 C 0.27 11.82 7.99 87.15 0.70 12.52 15 6 C -0.21 -9.58 5.89 -19.94 -0.12 -9.70 15 7 C -0.02 -0.82 9.63 22.26 0.21 -0.61 15 8 C -0.24 -11.06 9.73 22.46 0.22 -10.84 15 9 C 0.10 5.05 5.57 -21.28 -0.12 4.93 15 10 C -0.45 -21.20 9.03 23.40 0.21 -20.99 15 11 H 0.10 4.23 7.91 -2.91 -0.02 4.21 15 12 C 0.04 1.53 5.13 85.33 0.44 1.97 15 13 N -0.79 -36.33 10.96 21.86 0.24 -36.09 15 14 Si 0.99 32.67 29.60 68.60 2.03 34.70 15 15 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 16 H -0.27 -8.37 7.11 99.48 0.71 -7.66 15 17 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 18 C -0.19 -9.38 8.63 22.46 0.19 -9.19 15 19 C -0.05 -2.43 9.66 22.26 0.21 -2.22 15 20 N -0.54 -22.16 11.24 -302.42 -3.40 -25.56 15 21 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.12 4.81 7.86 -2.91 -0.02 4.79 15 25 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 26 H 0.30 12.31 8.29 -92.71 -0.77 11.54 15 27 H 0.12 5.72 6.16 -2.91 -0.02 5.70 15 28 H 0.11 4.72 7.93 -2.91 -0.02 4.70 15 Total: -1.00 -55.20 256.98 3.95 -51.26 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.18 Total: 18.79 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 3.84 Total: -27.42 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -3.87 Total: -79.54 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.76 Total: 2.22 kcal Atomic # 14 Polarization: 32.67 SS G_CDS: 2.03 Total: 34.70 kcal Total: -55.20 3.95 -51.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336518869.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.456 kcal (2) G-P(sol) polarization free energy of solvation -55.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds