Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48497 * 109.47063 * 239.99751 * 3 2 1 5 5 H 1.48504 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47310 * 119.99383 * 3 2 1 7 7 C 1.37872 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00307 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47398 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00297 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47240 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47322 * 65.00101 * 12 11 10 14 14 N 1.37797 * 121.69606 * 270.22466 * 13 12 11 15 15 C 1.29059 * 117.34618 * 180.31942 * 14 13 12 16 16 S 1.77175 * 105.71052 * 359.71902 * 15 14 13 17 17 C 1.34414 * 121.69672 * 89.99737 * 13 12 11 18 18 O 1.21853 * 127.26055 * 0.02562 * 17 13 12 19 19 H 0.96993 * 120.00179 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46853 * 60.00261 * 9 7 2 21 21 H 1.09000 * 109.47271 * 300.00205 * 9 7 2 22 22 H 1.09004 * 109.47308 * 59.99882 * 11 10 9 23 23 H 1.09001 * 109.47069 * 300.00481 * 11 10 9 24 24 H 1.09001 * 109.47254 * 304.99648 * 12 11 10 25 25 H 1.09007 * 109.47378 * 185.00134 * 12 11 10 26 26 H 1.08005 * 127.14371 * 179.75493 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5654 -4.8754 0.0000 12 6 2.6484 -5.9560 0.0006 13 7 3.4054 -5.8880 1.2530 14 7 4.5279 -5.0986 1.3784 15 6 5.1341 -5.1068 2.5178 16 16 4.2048 -6.2090 3.5477 17 6 3.0378 -6.5889 2.3394 18 8 2.0835 -7.3391 2.4453 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8898 21 1 0.6241 -2.5567 0.8903 22 1 0.9455 -4.9822 -0.8903 23 1 0.9449 -4.9827 0.8897 24 1 3.3225 -5.7954 -0.8407 25 1 2.1825 -6.9374 -0.0894 26 1 6.0229 -4.5557 2.7876 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378779746.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = -19.732285 kcal Electronic energy + Delta-G solvation = -13717.825984 eV Core-core repulsion = 11117.917319 eV Total energy + Delta-G solvation = -2599.908665 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53269 -37.65943 -36.82907 -33.41539 -32.54372 -29.45277 -27.02781 -25.30571 -23.28455 -22.31471 -20.69014 -19.34254 -17.27125 -16.62425 -16.16798 -15.56351 -15.47539 -15.01180 -14.45460 -14.14496 -13.57211 -13.23384 -12.96803 -12.39925 -12.15674 -11.51725 -10.96400 -10.88011 -10.81703 -10.46017 -10.17426 -10.04811 -9.55416 -9.17398 -8.90531 -8.69071 -8.24588 -6.14076 -4.16321 0.54412 1.28802 1.44595 1.99190 2.31787 3.29648 3.32534 3.36052 4.27597 4.45235 4.73389 5.07680 5.22262 5.28498 5.42005 5.54583 5.80914 5.97143 6.11188 7.01868 7.12674 7.35944 7.47892 7.74891 8.09554 8.48517 8.95705 9.48478 10.97480 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.006494 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.954838 B = 4310.526768 C = 4710.388552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.386 6.386 11 C 0.043 3.957 12 C 0.135 3.865 13 N -0.427 5.427 14 N -0.194 5.194 15 C 0.066 3.934 16 S -0.047 6.047 17 C 0.473 3.527 18 O -0.469 6.469 19 H 0.265 0.735 20 H 0.006 0.994 21 H 0.003 0.997 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -11.366 3.793 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.305 6.305 11 C -0.036 4.036 12 C 0.011 3.989 13 N -0.252 5.252 14 N -0.007 5.007 15 C -0.255 4.255 16 S 0.181 5.819 17 C 0.152 3.848 18 O -0.346 6.346 19 H 0.075 0.925 20 H 0.024 0.976 21 H 0.021 0.979 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.885 -11.702 4.076 15.248 hybrid contribution -0.308 1.059 -0.492 1.208 sum 8.577 -10.643 3.584 14.131 Atomic orbital electron populations 1.69952 1.06140 1.27342 1.50340 1.24954 0.94973 0.99459 0.95085 0.86378 0.79301 0.81839 0.78853 1.19959 1.21149 1.19998 1.20979 0.94003 0.89202 1.51080 0.91547 1.20215 0.88739 0.83566 0.95332 1.87926 1.35042 1.12362 1.95198 1.22637 0.94071 0.86387 1.00485 1.21929 0.93827 0.99661 0.83470 1.50553 1.22973 1.37774 1.13852 1.74189 0.96677 1.08454 1.21357 1.29816 1.03593 1.01784 0.90278 1.85770 1.27406 1.48852 1.19831 1.22445 0.90438 0.85170 0.86779 1.90965 1.28169 1.37930 1.77566 0.92549 0.97634 0.97946 0.92215 0.94054 0.87598 0.87586 0.74416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 15 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 15 9 C 0.20 5.39 5.69 36.00 0.20 5.60 15 10 O -0.39 -9.20 10.27 -35.23 -0.36 -9.57 15 11 C 0.04 0.80 6.28 37.15 0.23 1.03 15 12 C 0.14 2.02 6.36 -4.05 -0.03 1.99 15 13 N -0.43 -6.85 3.39 -64.88 -0.22 -7.07 15 14 N -0.19 -2.94 11.67 30.61 0.36 -2.58 15 15 C 0.07 0.73 12.87 51.60 0.66 1.39 15 16 S -0.05 -0.59 22.98 -107.50 -2.47 -3.06 15 17 C 0.47 7.67 8.34 53.89 0.45 8.12 15 18 O -0.47 -8.61 17.60 5.05 0.09 -8.52 15 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 20 H 0.01 0.17 8.14 -51.92 -0.42 -0.26 15 21 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 15 22 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.11 1.45 8.14 -51.93 -0.42 1.02 15 25 H 0.11 1.32 7.84 -51.92 -0.41 0.91 15 26 H 0.24 1.42 8.06 -52.48 -0.42 1.00 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -34.21 257.22 -4.40 -38.61 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: -2.49 Total: -6.39 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 1.10 Total: 4.22 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.87 Total: -35.89 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.27 Total: -18.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.47 Total: -3.06 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.21 -4.40 -38.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378779746.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.876 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds