Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48497 * 109.47063 * 239.99751 * 3 2 1 5 5 H 1.48504 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47310 * 119.99383 * 3 2 1 7 7 C 1.37872 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00307 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47398 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00297 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47240 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47322 * 65.00101 * 12 11 10 14 14 N 1.37797 * 121.69606 * 270.22466 * 13 12 11 15 15 C 1.29059 * 117.34618 * 180.31942 * 14 13 12 16 16 S 1.77175 * 105.71052 * 359.71902 * 15 14 13 17 17 C 1.34414 * 121.69672 * 89.99737 * 13 12 11 18 18 O 1.21853 * 127.26055 * 0.02562 * 17 13 12 19 19 H 0.96993 * 120.00179 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46853 * 60.00261 * 9 7 2 21 21 H 1.09000 * 109.47271 * 300.00205 * 9 7 2 22 22 H 1.09004 * 109.47308 * 59.99882 * 11 10 9 23 23 H 1.09001 * 109.47069 * 300.00481 * 11 10 9 24 24 H 1.09001 * 109.47254 * 304.99648 * 12 11 10 25 25 H 1.09007 * 109.47378 * 185.00134 * 12 11 10 26 26 H 1.08005 * 127.14371 * 179.75493 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5654 -4.8754 0.0000 12 6 2.6484 -5.9560 0.0006 13 7 3.4054 -5.8880 1.2530 14 7 4.5279 -5.0986 1.3784 15 6 5.1341 -5.1068 2.5178 16 16 4.2048 -6.2090 3.5477 17 6 3.0378 -6.5889 2.3394 18 8 2.0835 -7.3391 2.4453 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8898 21 1 0.6241 -2.5567 0.8903 22 1 0.9455 -4.9822 -0.8903 23 1 0.9449 -4.9827 0.8897 24 1 3.3225 -5.7954 -0.8407 25 1 2.1825 -6.9374 -0.0894 26 1 6.0229 -4.5557 2.7876 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378779746.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = -45.603837 kcal Electronic energy + Delta-G solvation = -13718.947859 eV Core-core repulsion = 11117.917319 eV Total energy + Delta-G solvation = -2601.030540 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.68981 -38.88644 -38.60376 -35.15328 -34.25371 -30.89947 -29.05874 -26.49012 -24.78069 -24.26997 -21.90090 -20.44996 -18.73725 -18.43765 -17.54544 -17.38833 -16.82192 -16.40704 -16.11319 -15.69871 -15.20588 -14.36608 -14.27271 -13.90408 -13.80142 -13.32578 -12.83529 -12.73678 -12.59531 -12.10472 -11.55582 -11.34438 -11.22111 -10.91685 -10.70795 -10.32719 -9.81742 -8.33979 -6.47204 -0.53112 0.26761 0.39693 0.84420 1.24972 1.39844 1.44812 1.53292 2.33002 3.00136 3.00350 3.54428 3.93876 3.96116 4.22841 4.37920 4.55860 4.56736 4.78938 4.79718 5.09953 5.51813 5.91021 5.94865 6.40530 6.46092 6.75039 7.24702 8.78336 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.035753 B = 0.006494 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.954838 B = 4310.526768 C = 4710.388552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.037 3.963 12 C 0.140 3.860 13 N -0.438 5.438 14 N -0.241 5.241 15 C 0.098 3.902 16 S -0.006 6.006 17 C 0.450 3.550 18 O -0.508 6.508 19 H 0.271 0.729 20 H -0.011 1.011 21 H -0.025 1.025 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.120 0.880 25 H 0.130 0.870 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -10.548 4.225 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.041 4.041 12 C 0.016 3.984 13 N -0.262 5.262 14 N -0.054 5.054 15 C -0.222 4.222 16 S 0.224 5.776 17 C 0.130 3.870 18 O -0.388 6.388 19 H 0.080 0.920 20 H 0.007 0.993 21 H -0.007 1.007 22 H 0.094 0.906 23 H 0.043 0.957 24 H 0.138 0.862 25 H 0.148 0.852 26 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 11.030 -10.901 4.510 16.150 hybrid contribution -0.915 0.748 -0.545 1.301 sum 10.114 -10.153 3.966 14.870 Atomic orbital electron populations 1.70074 1.07938 1.28781 1.50436 1.26005 0.95928 1.03549 0.93810 0.85199 0.78050 0.76417 0.79555 1.18750 1.20239 1.18789 1.21307 0.94148 0.90456 1.52353 0.91672 1.19823 0.88633 0.84901 0.93140 1.87882 1.34663 1.13519 1.95158 1.22918 0.95684 0.85047 1.00476 1.21933 0.93180 0.99109 0.84143 1.50663 1.23448 1.38006 1.14034 1.74213 0.97490 1.10282 1.23444 1.30935 1.03317 0.99478 0.88448 1.85651 1.25703 1.48510 1.17749 1.22979 0.90983 0.85170 0.87854 1.90934 1.29773 1.39339 1.78793 0.92046 0.99345 1.00738 0.90557 0.95736 0.86193 0.85182 0.69342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.16 15 2 C 0.01 0.31 5.46 84.65 0.46 0.78 15 3 Si 0.99 43.86 29.54 68.60 2.03 45.89 15 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.55 -32.32 9.43 25.60 0.24 -32.08 15 8 H 0.07 3.79 7.81 -2.91 -0.02 3.76 15 9 C 0.21 11.93 5.69 71.23 0.41 12.34 15 10 O -0.39 -19.05 10.27 -148.98 -1.53 -20.58 15 11 C 0.04 1.39 6.28 71.98 0.45 1.85 15 12 C 0.14 4.14 6.36 86.38 0.55 4.69 15 13 N -0.44 -13.77 3.39 -477.52 -1.62 -15.39 15 14 N -0.24 -6.91 11.67 -57.06 -0.67 -7.58 15 15 C 0.10 1.87 12.87 130.65 1.68 3.55 15 16 S -0.01 -0.14 22.98 -56.49 -1.30 -1.44 15 17 C 0.45 14.43 8.34 129.85 1.08 15.52 15 18 O -0.51 -18.94 17.60 -4.84 -0.09 -19.03 15 19 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 20 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 15 21 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 15 22 H 0.08 2.60 8.14 -2.38 -0.02 2.58 15 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 24 H 0.12 3.17 8.14 -2.39 -0.02 3.15 15 25 H 0.13 3.16 7.84 -2.38 -0.02 3.15 15 26 H 0.29 1.99 8.06 -2.91 -0.02 1.96 15 Total: -1.00 -75.14 257.22 3.17 -71.97 By element: Atomic # 1 Polarization: -5.51 SS G_CDS: 1.19 Total: -4.32 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.87 Total: 6.63 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.00 Total: -79.13 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.62 Total: -39.61 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.30 Total: -1.44 kcal Total: -75.14 3.17 -71.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378779746.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.366 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds