Wall clock time and date at job start Sun Mar 29 2020 21:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.81000 * 109.47005 * 240.00544 * 2 1 3 14 14 C 1.76203 * 100.00334 * 64.99739 * 13 2 1 15 15 N 1.30313 * 126.16371 * 359.69261 * 14 13 2 16 16 N 1.26103 * 117.59851 * 179.76202 * 15 14 13 17 17 C 1.29330 * 117.97547 * 0.54967 * 16 15 14 18 18 S 1.76479 * 107.87970 * 359.70886 * 17 16 15 19 19 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 20 20 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 22 22 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 23 23 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 25 25 H 1.08001 * 126.05583 * 179.68791 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.4698 0.1624 3.1904 11 1 6.6447 -2.2553 3.1239 12 1 6.6417 -0.9826 1.0598 13 16 2.1333 -0.8531 -1.4780 14 6 1.5438 0.2424 -2.7258 15 7 0.8636 1.3365 -2.5297 16 7 0.5259 2.0043 -3.5448 17 6 0.8669 1.5540 -4.7082 18 16 1.7616 0.0520 -4.4669 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.7517 -1.7716 1.2054 23 1 1.6054 -0.2618 2.1369 24 1 4.0609 -2.2439 4.0352 25 1 0.6435 2.0152 -5.6588 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379313066.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:37 Heat of formation + Delta-G solvation = 50.316599 kcal Electronic energy + Delta-G solvation = -11540.623818 eV Core-core repulsion = 9386.505572 eV Total energy + Delta-G solvation = -2154.118246 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.66209 -34.69896 -32.25996 -31.26594 -27.56840 -26.55172 -23.38898 -21.26025 -20.83566 -18.86747 -17.15865 -16.44071 -15.52633 -15.23066 -14.62684 -14.03580 -13.47378 -12.91392 -12.60071 -11.85944 -11.71714 -11.33226 -11.01972 -10.80151 -10.62421 -10.45304 -10.28777 -10.21591 -9.62540 -9.57016 -9.50021 -9.24340 -8.46672 -7.31742 -6.11555 -4.14903 0.46211 0.84728 1.35613 1.86483 2.71784 2.73246 3.28110 3.34730 3.38722 4.38675 4.49945 5.12666 5.25985 5.49829 5.63808 5.76392 6.05446 6.45282 6.53395 6.69355 7.42445 7.45915 7.84737 8.19765 8.68913 8.89844 9.50268 10.99268 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.042413 B = 0.007048 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.017241 B = 3971.560793 C = 4326.019374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 H 0.094 0.906 4 C 0.036 3.964 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 S 0.063 5.937 14 C 0.014 3.986 15 N -0.283 5.283 16 N -0.249 5.249 17 C -0.018 4.018 18 S 0.067 5.933 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.263 0.737 25 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 2.383 -13.695 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 H 0.112 0.888 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 S 0.297 5.703 14 C -0.371 4.371 15 N -0.126 5.126 16 N -0.083 5.083 17 C -0.325 4.325 18 S 0.303 5.697 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.695 1.462 -13.396 13.973 hybrid contribution 0.397 1.214 0.095 1.281 sum -3.298 2.676 -13.301 13.962 Atomic orbital electron populations 1.22106 0.93915 1.02046 1.02612 1.23831 0.97794 1.02863 0.95176 0.88768 1.19126 0.96569 0.95657 0.88908 1.21248 0.91419 1.35217 1.08757 0.91869 1.24982 0.98650 0.94924 0.95445 1.69948 1.35806 1.35340 1.11922 0.86571 0.85395 0.77619 0.78412 1.20567 1.21147 1.19581 1.86335 1.63826 1.25469 0.94652 1.32343 1.01751 1.01930 1.01082 1.71753 1.14945 1.03963 1.21977 1.70694 1.17478 1.25154 0.94999 1.30908 1.02935 0.96673 1.01990 1.85679 1.55105 1.26275 1.02669 0.91901 0.92449 0.91642 0.95360 0.93978 0.92758 0.77137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.01 37.16 0.33 -2.29 15 2 C -0.07 -1.35 2.28 -26.73 -0.06 -1.41 15 3 H 0.09 2.00 8.14 -51.91 -0.42 1.58 15 4 C 0.04 0.88 4.44 -27.88 -0.12 0.76 15 5 C -0.53 -14.13 8.53 -34.44 -0.29 -14.42 15 6 H 0.06 1.67 7.60 -52.49 -0.40 1.27 15 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 8 N -0.89 -25.72 13.29 55.43 0.74 -24.98 15 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 13 S 0.06 1.19 21.07 -107.50 -2.26 -1.08 15 14 C 0.01 0.25 7.55 52.12 0.39 0.64 15 15 N -0.28 -5.12 9.07 31.32 0.28 -4.83 15 16 N -0.25 -4.03 11.55 30.50 0.35 -3.68 15 17 C -0.02 -0.22 12.68 51.71 0.66 0.43 15 18 S 0.07 0.86 23.54 -107.50 -2.53 -1.67 15 19 H 0.06 1.11 5.90 -51.93 -0.31 0.80 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 25 H 0.21 1.53 8.06 -52.49 -0.42 1.10 15 LS Contribution 249.89 15.07 3.77 3.77 Total: -1.00 -29.39 249.89 -6.25 -35.64 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -2.38 Total: -4.58 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 0.81 Total: -14.68 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 1.37 Total: -33.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -4.79 Total: -2.74 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.39 -6.25 -35.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379313066.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.953 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds