Wall clock time and date at job start Sun Mar 29 2020 21:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.81000 * 109.47005 * 240.00544 * 2 1 3 14 14 C 1.76203 * 100.00334 * 64.99739 * 13 2 1 15 15 N 1.30313 * 126.16371 * 359.69261 * 14 13 2 16 16 N 1.26103 * 117.59851 * 179.76202 * 15 14 13 17 17 C 1.29330 * 117.97547 * 0.54967 * 16 15 14 18 18 S 1.76479 * 107.87970 * 359.70886 * 17 16 15 19 19 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 20 20 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 22 22 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 23 23 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 25 25 H 1.08001 * 126.05583 * 179.68791 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.4698 0.1624 3.1904 11 1 6.6447 -2.2553 3.1239 12 1 6.6417 -0.9826 1.0598 13 16 2.1333 -0.8531 -1.4780 14 6 1.5438 0.2424 -2.7258 15 7 0.8636 1.3365 -2.5297 16 7 0.5259 2.0043 -3.5448 17 6 0.8669 1.5540 -4.7082 18 16 1.7616 0.0520 -4.4669 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.7517 -1.7716 1.2054 23 1 1.6054 -0.2618 2.1369 24 1 4.0609 -2.2439 4.0352 25 1 0.6435 2.0152 -5.6588 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379313066.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:37 Heat of formation + Delta-G solvation = 31.876640 kcal Electronic energy + Delta-G solvation = -11541.423435 eV Core-core repulsion = 9386.505572 eV Total energy + Delta-G solvation = -2154.917863 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.87186 -36.51209 -34.15904 -32.53819 -29.41004 -27.73344 -25.29444 -22.66917 -22.29288 -20.07472 -18.54429 -18.39583 -16.94096 -16.55860 -16.52843 -15.36776 -14.79299 -14.56805 -14.17264 -13.61536 -13.33855 -13.08656 -12.66907 -12.57176 -12.39445 -11.79702 -11.69963 -11.54200 -11.33836 -11.15390 -10.99384 -10.65767 -10.55359 -8.72549 -8.21302 -6.30958 -0.65898 -0.33999 0.22150 0.61934 1.21064 1.41798 1.42190 1.53461 1.53984 2.41239 3.14053 3.53543 3.95642 4.03927 4.16552 4.49629 4.55023 4.87407 4.97157 5.19578 5.37321 5.46932 5.75520 6.14501 6.81073 7.37832 7.51944 8.90173 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.042413 B = 0.007048 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.017241 B = 3971.560793 C = 4326.019374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 H 0.080 0.920 4 C 0.044 3.956 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.263 1.263 13 S 0.040 5.960 14 C -0.017 4.017 15 N -0.303 5.303 16 N -0.290 5.290 17 C 0.014 3.986 18 S 0.130 5.870 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.009 0.991 23 H 0.019 0.981 24 H 0.265 0.735 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 3.002 -16.279 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.189 4.189 3 H 0.098 0.902 4 C 0.005 3.995 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.187 1.187 13 S 0.272 5.728 14 C -0.404 4.404 15 N -0.145 5.145 16 N -0.123 5.123 17 C -0.291 4.291 18 S 0.367 5.633 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.027 0.973 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -3.312 2.105 -16.002 16.477 hybrid contribution 0.211 1.091 0.640 1.283 sum -3.101 3.196 -15.362 15.994 Atomic orbital electron populations 1.22012 0.92108 1.02533 1.02958 1.23467 0.99221 1.01443 0.94743 0.90197 1.18902 0.95617 0.94695 0.90283 1.21571 0.92708 1.34678 1.08608 0.91842 1.25821 1.03287 0.94681 0.95166 1.70064 1.37591 1.36496 1.12647 0.85565 0.79899 0.77691 0.78713 1.20040 1.20732 1.18698 1.86122 1.65693 1.26239 0.94717 1.32001 1.03371 1.02080 1.02945 1.71735 1.14787 1.04257 1.23766 1.70693 1.19716 1.26034 0.95905 1.31861 0.99184 0.95408 1.02691 1.85504 1.53668 1.25728 0.98417 0.91427 0.91862 0.91289 0.97266 0.96287 0.92661 0.72008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.01 71.98 0.65 -4.30 15 2 C -0.06 -2.44 2.28 30.59 0.07 -2.37 15 3 H 0.08 3.51 8.14 -2.39 -0.02 3.49 15 4 C 0.04 2.21 4.44 29.85 0.13 2.34 15 5 C -0.54 -29.39 8.53 25.60 0.22 -29.17 15 6 H 0.06 3.40 7.60 -2.91 -0.02 3.37 15 7 C 0.01 0.51 5.46 84.66 0.46 0.97 15 8 N -0.93 -54.72 13.29 21.45 0.28 -54.43 15 9 Si 0.96 43.52 29.54 68.60 2.03 45.55 15 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 13 S 0.04 1.51 21.07 -56.49 -1.19 0.32 15 14 C -0.02 -0.56 7.55 130.47 0.99 0.43 15 15 N -0.30 -10.58 9.07 -54.83 -0.50 -11.07 15 16 N -0.29 -8.66 11.55 -57.40 -0.66 -9.32 15 17 C 0.01 0.27 12.68 130.61 1.66 1.93 15 18 S 0.13 2.92 23.54 -56.49 -1.33 1.59 15 19 H 0.07 2.38 5.90 -2.39 -0.01 2.36 15 20 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 24 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 25 H 0.26 2.15 8.06 -2.91 -0.02 2.12 15 Total: -1.00 -64.38 249.89 4.00 -60.39 By element: Atomic # 1 Polarization: -4.05 SS G_CDS: 1.19 Total: -2.86 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 4.17 Total: -30.16 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -0.88 Total: -74.83 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -2.52 Total: 1.92 kcal Total: -64.38 4.00 -60.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379313066.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.263 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds