Wall clock time and date at job start Sun Mar 29 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47261 * 240.00486 * 3 2 1 5 5 H 1.48500 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47200 * 120.00462 * 3 2 1 7 7 C 1.37876 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47343 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.81400 * 103.00097 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47145 * 179.97438 * 12 11 10 14 14 O 1.42895 * 109.47036 * 180.02562 * 13 12 11 15 15 C 1.42901 * 113.99948 * 180.02562 * 14 13 12 16 16 C 1.53785 * 113.61262 * 249.13874 * 15 14 13 17 17 C 1.53960 * 87.01759 * 220.04485 * 16 15 14 18 18 C 1.53777 * 87.11033 * 25.36407 * 17 16 15 19 19 H 0.96996 * 119.99679 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47217 * 59.99913 * 9 7 2 21 21 H 1.09003 * 109.46953 * 299.99882 * 9 7 2 22 22 H 1.09007 * 109.47220 * 59.99877 * 10 9 7 23 23 H 1.08998 * 109.47223 * 300.00125 * 10 9 7 24 24 H 1.09001 * 109.46713 * 60.00360 * 12 11 10 25 25 H 1.08993 * 109.47294 * 299.99893 * 12 11 10 26 26 H 1.09001 * 109.46801 * 300.00406 * 13 12 11 27 27 H 1.09001 * 109.46998 * 60.00003 * 13 12 11 28 28 H 1.08997 * 112.84924 * 20.33129 * 15 14 13 29 29 H 1.08993 * 113.61535 * 334.56758 * 16 15 14 30 30 H 1.09005 * 113.61314 * 105.46946 * 16 15 14 31 31 H 1.08997 * 113.53827 * 270.80932 * 17 16 15 32 32 H 1.08997 * 113.66104 * 139.93501 * 17 16 15 33 33 H 1.08997 * 113.61337 * 220.08743 * 18 17 16 34 34 H 1.09005 * 113.69350 * 89.19496 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3383 -5.2330 0.0002 12 6 2.6650 -6.4702 -0.0007 13 6 2.0541 -7.8730 0.0005 14 8 3.0992 -8.8475 0.0004 15 6 2.6340 -10.1987 0.0009 16 6 2.9083 -10.9442 1.3177 17 6 3.2579 -12.1715 0.4565 18 6 3.6043 -11.1846 -0.6708 19 1 -0.4849 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6248 -2.5570 0.8897 22 1 2.8720 -3.6043 0.8895 23 1 2.8719 -3.6043 -0.8905 24 1 3.2817 -6.3421 0.8889 25 1 3.2804 -6.3423 -0.8910 26 1 1.4388 -8.0006 0.8912 27 1 1.4371 -8.0013 -0.8888 28 1 1.6055 -10.2923 -0.3477 29 1 3.7558 -10.5468 1.8761 30 1 2.0204 -11.0813 1.9350 31 1 2.3998 -12.8055 0.2335 32 1 4.1165 -12.7336 0.8240 33 1 3.2776 -11.5156 -1.6565 34 1 4.6424 -10.8524 -0.6584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379352134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:35 Heat of formation + Delta-G solvation = -48.716977 kcal Electronic energy + Delta-G solvation = -13196.908776 eV Core-core repulsion = 10835.116679 eV Total energy + Delta-G solvation = -2361.792097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.43679 -36.36770 -33.68820 -31.05716 -30.85990 -25.92039 -25.37372 -24.91266 -23.05627 -20.94387 -19.87925 -17.41416 -16.51817 -15.96535 -15.70535 -15.24243 -14.80921 -14.49550 -13.91969 -13.26784 -13.01600 -12.93701 -12.70068 -12.03655 -11.83669 -11.78735 -11.42872 -11.20920 -11.01488 -10.87590 -10.68799 -10.57877 -10.18978 -9.66383 -9.54978 -9.53251 -9.08827 -8.41968 -7.17878 -6.06118 -4.10821 2.01210 3.20361 3.30792 3.35348 3.37977 3.75522 4.32611 4.36669 4.41951 4.59566 4.60993 4.97456 5.02925 5.12311 5.29381 5.40265 5.42966 5.51142 5.58785 5.65937 5.77472 5.83499 5.88672 5.99237 6.05337 6.18216 6.71660 7.13237 7.55982 7.64670 7.90059 8.27104 8.93944 9.53029 11.04739 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.097522 B = 0.003377 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.046222 B = 8290.092057 C = 8423.500558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.055 4.055 11 S -0.280 6.280 12 C -0.092 4.092 13 C 0.081 3.919 14 O -0.375 6.375 15 C 0.062 3.938 16 C -0.158 4.158 17 C -0.142 4.142 18 C -0.137 4.137 19 H 0.263 0.737 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -20.851 0.277 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.202 4.202 11 S -0.054 6.054 12 C -0.241 4.241 13 C 0.004 3.996 14 O -0.294 6.294 15 C 0.004 3.996 16 C -0.196 4.196 17 C -0.180 4.180 18 C -0.175 4.175 19 H 0.073 0.927 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.263 -20.871 0.277 21.304 hybrid contribution 1.482 1.088 0.015 1.838 sum 5.745 -19.783 0.292 20.602 Atomic orbital electron populations 1.69963 1.06083 1.27008 1.49897 1.25014 0.94908 0.99315 0.95015 0.86567 0.79511 0.82711 0.78686 1.20133 1.21154 1.20139 1.21057 0.93000 0.90247 1.51932 0.92463 1.18906 0.93409 0.89183 0.98599 1.23705 1.01362 0.91842 1.03336 1.86798 1.16822 1.03584 1.98157 1.23145 1.00376 0.95031 1.05514 1.22161 0.89611 0.86662 1.01152 1.87931 1.32675 1.14162 1.94651 1.23734 0.98006 0.81226 0.96654 1.23528 1.02470 0.96318 0.97304 1.22684 1.01832 0.96162 0.97274 1.23202 1.00797 0.95212 0.98275 0.92700 0.95473 0.95483 0.91227 0.91220 0.89845 0.89835 0.92440 0.92433 0.89536 0.89223 0.91286 0.90032 0.90801 0.91048 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.99 4.98 -27.89 -0.14 0.85 16 10 C -0.05 -1.16 5.88 37.16 0.22 -0.95 16 11 S -0.28 -5.27 21.74 -107.50 -2.34 -7.60 16 12 C -0.09 -1.38 6.31 37.16 0.23 -1.15 16 13 C 0.08 1.07 5.79 37.16 0.22 1.28 16 14 O -0.37 -4.82 10.35 -35.23 -0.36 -5.19 16 15 C 0.06 0.62 4.30 -25.92 -0.11 0.51 16 16 C -0.16 -1.37 7.93 -25.82 -0.20 -1.58 16 17 C -0.14 -1.01 8.09 -25.83 -0.21 -1.22 16 18 C -0.14 -1.15 7.91 -25.92 -0.21 -1.36 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 24 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.77 7.88 -51.93 -0.41 0.36 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -29.80 299.90 -8.95 -38.75 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.87 Total: -3.88 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.61 Total: -17.03 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.36 Total: -5.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.34 Total: -7.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.80 -8.95 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379352134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.968 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds