Wall clock time and date at job start Sun Mar 29 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47261 * 240.00486 * 3 2 1 5 5 H 1.48500 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47200 * 120.00462 * 3 2 1 7 7 C 1.37876 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47343 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.81400 * 103.00097 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47145 * 179.97438 * 12 11 10 14 14 O 1.42895 * 109.47036 * 180.02562 * 13 12 11 15 15 C 1.42901 * 113.99948 * 180.02562 * 14 13 12 16 16 C 1.53785 * 113.61262 * 249.13874 * 15 14 13 17 17 C 1.53960 * 87.01759 * 220.04485 * 16 15 14 18 18 C 1.53777 * 87.11033 * 25.36407 * 17 16 15 19 19 H 0.96996 * 119.99679 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47217 * 59.99913 * 9 7 2 21 21 H 1.09003 * 109.46953 * 299.99882 * 9 7 2 22 22 H 1.09007 * 109.47220 * 59.99877 * 10 9 7 23 23 H 1.08998 * 109.47223 * 300.00125 * 10 9 7 24 24 H 1.09001 * 109.46713 * 60.00360 * 12 11 10 25 25 H 1.08993 * 109.47294 * 299.99893 * 12 11 10 26 26 H 1.09001 * 109.46801 * 300.00406 * 13 12 11 27 27 H 1.09001 * 109.46998 * 60.00003 * 13 12 11 28 28 H 1.08997 * 112.84924 * 20.33129 * 15 14 13 29 29 H 1.08993 * 113.61535 * 334.56758 * 16 15 14 30 30 H 1.09005 * 113.61314 * 105.46946 * 16 15 14 31 31 H 1.08997 * 113.53827 * 270.80932 * 17 16 15 32 32 H 1.08997 * 113.66104 * 139.93501 * 17 16 15 33 33 H 1.08997 * 113.61337 * 220.08743 * 18 17 16 34 34 H 1.09005 * 113.69350 * 89.19496 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3383 -5.2330 0.0002 12 6 2.6650 -6.4702 -0.0007 13 6 2.0541 -7.8730 0.0005 14 8 3.0992 -8.8475 0.0004 15 6 2.6340 -10.1987 0.0009 16 6 2.9083 -10.9442 1.3177 17 6 3.2579 -12.1715 0.4565 18 6 3.6043 -11.1846 -0.6708 19 1 -0.4849 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6248 -2.5570 0.8897 22 1 2.8720 -3.6043 0.8895 23 1 2.8719 -3.6043 -0.8905 24 1 3.2817 -6.3421 0.8889 25 1 3.2804 -6.3423 -0.8910 26 1 1.4388 -8.0006 0.8912 27 1 1.4371 -8.0013 -0.8888 28 1 1.6055 -10.2923 -0.3477 29 1 3.7558 -10.5468 1.8761 30 1 2.0204 -11.0813 1.9350 31 1 2.3998 -12.8055 0.2335 32 1 4.1165 -12.7336 0.8240 33 1 3.2776 -11.5156 -1.6565 34 1 4.6424 -10.8524 -0.6584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379352134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:35 Heat of formation + Delta-G solvation = -64.966450 kcal Electronic energy + Delta-G solvation = -13197.613406 eV Core-core repulsion = 10835.116679 eV Total energy + Delta-G solvation = -2362.496727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20390 -37.22744 -35.79007 -32.92566 -32.15846 -27.39603 -26.57193 -25.68029 -24.30594 -22.81132 -20.56363 -18.68251 -18.30345 -16.98144 -16.86078 -16.51646 -16.35837 -15.70083 -15.57302 -14.76138 -14.36919 -14.00851 -13.70350 -13.45391 -13.36678 -12.95754 -12.73765 -12.54390 -12.47516 -12.16319 -12.04276 -11.68638 -11.59899 -11.38827 -11.22126 -10.89068 -10.60553 -10.41334 -8.70633 -8.23750 -6.37475 0.58243 1.41207 1.44552 1.52698 1.66983 2.40395 2.83812 3.09556 3.64813 3.68399 3.85798 3.85837 3.96940 4.08924 4.23551 4.32159 4.36817 4.42701 4.66459 4.73114 4.82384 4.84578 4.84863 5.03308 5.04796 5.22243 5.36898 5.39648 5.48257 5.72804 6.10040 6.24919 6.76539 7.32051 8.87978 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.097522 B = 0.003377 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.046222 B = 8290.092057 C = 8423.500558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.044 3.956 10 C -0.047 4.047 11 S -0.298 6.298 12 C -0.078 4.078 13 C 0.088 3.912 14 O -0.390 6.390 15 C 0.047 3.953 16 C -0.161 4.161 17 C -0.131 4.131 18 C -0.138 4.138 19 H 0.266 0.734 20 H -0.002 1.002 21 H -0.002 1.002 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -21.761 0.225 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.195 4.195 11 S -0.071 6.071 12 C -0.226 4.226 13 C 0.010 3.990 14 O -0.310 6.310 15 C -0.011 4.011 16 C -0.199 4.199 17 C -0.168 4.168 18 C -0.175 4.175 19 H 0.075 0.925 20 H 0.017 0.983 21 H 0.016 0.984 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.570 -21.797 0.226 22.499 hybrid contribution 1.064 1.247 0.032 1.640 sum 6.635 -20.550 0.257 21.596 Atomic orbital electron populations 1.70105 1.07964 1.28184 1.50837 1.26028 0.95806 1.03552 0.94301 0.85392 0.78169 0.77499 0.79336 1.18952 1.20784 1.18969 1.21520 0.93738 0.91369 1.51800 0.91445 1.18677 0.93676 0.91276 0.95763 1.23359 1.00184 0.91845 1.04121 1.86787 1.18613 1.03494 1.98232 1.23134 0.98755 0.94611 1.06095 1.22015 0.89586 0.85790 1.01562 1.87902 1.32863 1.15345 1.94869 1.24101 0.99047 0.79937 0.98020 1.23534 1.02432 0.96921 0.96982 1.22682 1.02710 0.95595 0.95848 1.23223 0.99999 0.95040 0.99263 0.92505 0.98336 0.98360 0.90403 0.90374 0.89293 0.89214 0.92161 0.91953 0.88524 0.90149 0.90669 0.88575 0.89890 0.90034 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.04 2.40 4.98 29.84 0.15 2.55 16 10 C -0.05 -2.01 5.88 71.98 0.42 -1.58 16 11 S -0.30 -11.09 21.74 -56.49 -1.23 -12.31 16 12 C -0.08 -2.21 6.31 71.98 0.45 -1.75 16 13 C 0.09 2.17 5.79 71.98 0.42 2.58 16 14 O -0.39 -9.45 10.35 -148.98 -1.54 -10.99 16 15 C 0.05 0.85 4.30 31.12 0.13 0.98 16 16 C -0.16 -2.51 7.93 31.18 0.25 -2.27 16 17 C -0.13 -1.55 8.09 31.18 0.25 -1.30 16 18 C -0.14 -2.05 7.91 31.12 0.25 -1.80 16 19 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 20 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 22 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 23 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 1.54 7.88 -2.39 -0.02 1.52 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -63.85 299.90 3.59 -60.25 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.04 Total: 6.62 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.02 Total: -32.75 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.28 Total: -56.72 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.54 Total: -10.99 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -11.09 SS G_CDS: -1.23 Total: -12.31 kcal Total: -63.85 3.59 -60.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379352134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.712 kcal (2) G-P(sol) polarization free energy of solvation -63.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds