Wall clock time and date at job start Sun Mar 29 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.45194 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00260 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00481 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.76091 * 29.29429 * 14 12 11 16 16 C 1.55139 * 110.86273 * 152.79248 * 14 12 11 17 17 C 1.54034 * 106.80717 * 160.10421 * 16 14 12 18 18 C 1.54276 * 109.09127 * 313.05429 * 17 16 14 19 19 S 1.83103 * 104.64567 * 27.82774 * 18 17 16 20 20 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 1.08996 * 109.97455 * 279.65541 * 16 14 12 26 26 H 1.09002 * 109.96905 * 40.93050 * 16 14 12 27 27 H 1.09004 * 109.63736 * 193.02385 * 17 16 14 28 28 H 1.08998 * 109.28301 * 72.87485 * 17 16 14 29 29 H 1.08994 * 110.40230 * 269.03970 * 18 17 16 30 30 H 1.08997 * 110.49947 * 146.66694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 8 5.4735 -2.6364 -0.0175 12 6 6.0830 -3.8324 -0.0230 13 8 5.4249 -4.8458 -0.0227 14 6 7.5879 -3.9113 -0.0296 15 1 8.0224 -3.0451 0.4694 16 6 8.0749 -5.2293 0.6280 17 6 9.5167 -5.4645 0.1395 18 6 9.5722 -5.2564 -1.3881 19 16 8.2263 -4.0665 -1.7424 20 1 -0.4850 0.8400 -0.0004 21 1 3.8713 -0.6783 -0.8962 22 1 3.8786 -0.6819 0.8837 23 1 3.6619 -3.1521 0.8797 24 1 3.6545 -3.1485 -0.9003 25 1 8.0567 -5.1327 1.7135 26 1 7.4386 -6.0578 0.3168 27 1 9.8240 -6.4819 0.3814 28 1 10.1831 -4.7548 0.6298 29 1 9.3930 -6.1982 -1.9066 30 1 10.5353 -4.8390 -1.6817 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379352173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:58 Heat of formation + Delta-G solvation = -101.909335 kcal Electronic energy + Delta-G solvation = -13666.607263 eV Core-core repulsion = 11166.675477 eV Total energy + Delta-G solvation = -2499.931786 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.14504 -36.77052 -35.71728 -33.32555 -31.06051 -30.20046 -26.19024 -24.84583 -21.97719 -20.71631 -20.43988 -17.86253 -17.24850 -16.80644 -16.19031 -15.69046 -14.99414 -14.46828 -14.23116 -13.74473 -13.39031 -12.93991 -12.60372 -12.42047 -12.03862 -11.87044 -11.47474 -11.32113 -11.18640 -10.71584 -10.66972 -10.23073 -10.04614 -9.94257 -9.72564 -9.35529 -8.62278 -7.93933 -6.12971 -4.14358 1.10651 1.97562 2.72977 2.92231 3.28699 3.35769 3.40294 4.10848 4.38639 4.38886 4.48418 4.76456 4.82216 5.01419 5.20610 5.26659 5.27528 5.41576 5.50252 5.78422 5.92788 5.95438 6.42838 6.71694 7.16214 7.20710 7.61576 8.02037 8.39350 8.88392 9.46520 10.99569 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.055486 B = 0.005080 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.508235 B = 5511.020015 C = 5727.235245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.354 6.354 12 C 0.477 3.523 13 O -0.499 6.499 14 C -0.051 4.051 15 H 0.128 0.872 16 C -0.119 4.119 17 C -0.126 4.126 18 C -0.081 4.081 19 S -0.234 6.234 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.028 0.972 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.840 -8.973 0.660 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.271 6.271 12 C 0.317 3.683 13 O -0.387 6.387 14 C -0.180 4.180 15 H 0.146 0.854 16 C -0.158 4.158 17 C -0.165 4.165 18 C -0.230 4.230 19 S -0.008 6.008 20 H 0.076 0.924 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.101 -8.620 -0.373 21.874 hybrid contribution 0.537 0.349 0.982 1.173 sum 20.638 -8.271 0.610 22.242 Atomic orbital electron populations 1.69897 1.06276 1.27227 1.50085 1.24929 0.94764 0.99174 0.94082 0.86752 0.80403 0.83261 0.78806 1.19999 1.21136 1.18777 1.20832 0.88202 0.95078 1.52452 0.90621 1.19637 0.97047 0.90048 0.97960 1.23457 0.71798 1.01802 1.01945 1.86482 1.26613 1.31497 1.82481 1.22441 0.89921 0.82621 0.73348 1.90643 1.66493 1.36559 1.45004 1.23735 0.92778 1.04101 0.97405 0.85400 1.22670 0.96159 0.95193 1.01741 1.22318 0.96866 1.03948 0.93331 1.24116 0.99265 1.00775 0.98818 1.87988 1.41575 1.59699 1.11542 0.92414 0.95720 0.95343 0.91502 0.91515 0.88897 0.88484 0.89222 0.90261 0.88564 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.60 27.46 -169.99 -4.67 16.93 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.21 6.55 56.52 0.37 -5.84 16 7 C -0.53 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 16 10 C 0.08 1.80 5.40 37.16 0.20 2.00 16 11 O -0.35 -6.97 10.22 -39.25 -0.40 -7.37 16 12 C 0.48 8.27 7.20 36.00 0.26 8.53 16 13 O -0.50 -9.72 15.67 -18.76 -0.29 -10.01 16 14 C -0.05 -0.64 3.72 -26.75 -0.10 -0.74 16 15 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 16 C -0.12 -1.14 5.77 -25.06 -0.14 -1.29 16 17 C -0.13 -0.85 6.38 -25.52 -0.16 -1.01 16 18 C -0.08 -0.64 7.34 37.83 0.28 -0.36 16 19 S -0.23 -2.98 22.71 -107.50 -2.44 -5.42 16 20 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 21 H 0.02 0.60 7.56 -51.93 -0.39 0.21 16 22 H 0.03 0.69 7.21 -51.93 -0.37 0.31 16 23 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 24 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 1.09 7.34 -51.93 -0.38 0.71 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 269.69 15.07 4.06 4.06 Total: -1.00 -32.19 269.69 -7.31 -39.50 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -4.11 Total: -4.26 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.22 Total: -6.69 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.70 Total: -17.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.44 Total: -5.42 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.19 -7.31 -39.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379352173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.413 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds