Wall clock time and date at job start Sun Mar 29 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99983 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99870 * 180.02562 * 12 11 10 15 15 H 1.08998 * 110.70117 * 338.30674 * 14 12 11 16 16 C 1.54257 * 110.78417 * 214.99523 * 14 12 11 17 17 C 1.52333 * 112.59153 * 217.19672 * 16 14 12 18 18 C 1.54263 * 112.58444 * 0.02562 * 17 16 14 19 19 S 1.83955 * 110.78924 * 101.83873 * 14 12 11 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 24 24 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 25 25 H 1.08996 * 108.87489 * 338.02047 * 16 14 12 26 26 H 1.09005 * 108.86961 * 96.52206 * 16 14 12 27 27 H 1.09000 * 108.87000 * 120.82065 * 17 16 14 28 28 H 1.08997 * 108.87010 * 239.32821 * 17 16 14 29 29 H 1.09003 * 110.78521 * 142.80016 * 18 17 16 30 30 H 1.09003 * 110.78705 * 266.25312 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9195 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5663 -7.3880 -0.0019 15 1 0.5468 -7.3013 0.3739 16 6 2.3696 -8.4123 0.8258 17 6 2.3441 -9.8074 0.2146 18 6 1.5215 -9.8682 -1.0890 19 16 1.5861 -8.1294 -1.6853 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 -0.8905 24 1 2.8720 -3.6043 0.8894 25 1 3.4042 -8.0765 0.8945 26 1 1.9485 -8.4620 1.8300 27 1 3.3670 -10.1172 0.0003 28 1 1.9105 -10.5004 0.9356 29 1 1.9865 -10.5419 -1.8088 30 1 0.4938 -10.1685 -0.8843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379352174.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:59 Heat of formation + Delta-G solvation = -103.339623 kcal Electronic energy + Delta-G solvation = -13617.158587 eV Core-core repulsion = 11117.164779 eV Total energy + Delta-G solvation = -2499.993808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07967 -36.67337 -35.63159 -33.36055 -30.85926 -29.92151 -26.24053 -24.83985 -22.04041 -20.86572 -20.08797 -17.81874 -17.18826 -16.38848 -15.91797 -15.86808 -14.89595 -14.50950 -14.37540 -13.58164 -13.21991 -12.89754 -12.52372 -12.34551 -11.97358 -11.80712 -11.24859 -11.06036 -10.83091 -10.74528 -10.71615 -10.35622 -10.14545 -9.67942 -9.65265 -9.29305 -8.45024 -7.91419 -6.10664 -4.15168 1.18853 1.95658 2.77548 3.02232 3.27781 3.35211 3.40330 4.12161 4.38346 4.48223 4.70934 4.76226 4.87493 5.12093 5.23392 5.26013 5.33974 5.58873 5.68329 5.86047 6.04799 6.07037 6.61028 6.89786 7.54530 7.61260 7.85296 8.10827 8.23458 8.90500 9.49361 11.00900 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.069677 B = 0.004595 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.757590 B = 6091.787916 C = 6219.446924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.350 6.350 12 C 0.476 3.524 13 O -0.500 6.500 14 C -0.044 4.044 15 H 0.126 0.874 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.074 4.074 19 S -0.239 6.239 20 H 0.263 0.737 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -19.319 0.978 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.266 6.266 12 C 0.315 3.685 13 O -0.388 6.388 14 C -0.173 4.173 15 H 0.144 0.856 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.223 4.223 19 S -0.012 6.012 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.074 -18.646 -0.153 18.762 hybrid contribution 0.405 0.525 1.088 1.274 sum 2.479 -18.121 0.935 18.314 Atomic orbital electron populations 1.69985 1.06101 1.26905 1.49814 1.24985 0.94916 0.99404 0.94832 0.86411 0.80060 0.83114 0.77714 1.19571 1.20800 1.20814 1.21011 0.93226 0.90051 1.52156 0.92168 1.19190 0.94193 0.88965 0.98973 1.23722 0.96470 0.78433 1.01110 1.86528 1.42220 1.15639 1.82185 1.22393 0.86240 0.86402 0.73424 1.90626 1.15279 1.87833 1.45106 1.23570 1.04200 0.93066 0.96476 0.85555 1.22105 1.02723 0.92104 0.99192 1.21978 1.01635 0.96746 0.95722 1.24262 1.03810 0.94829 0.99356 1.88353 1.97899 1.05134 1.09816 0.92742 0.95244 0.95294 0.92125 0.92111 0.88604 0.89838 0.90152 0.90297 0.87320 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.71 5.40 37.16 0.20 1.91 16 11 O -0.35 -7.25 10.22 -39.26 -0.40 -7.65 16 12 C 0.48 8.62 7.12 36.01 0.26 8.88 16 13 O -0.50 -10.07 15.58 -18.75 -0.29 -10.36 16 14 C -0.04 -0.59 3.82 -27.22 -0.10 -0.69 16 15 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 16 C -0.12 -1.26 5.89 -26.41 -0.16 -1.42 16 17 C -0.12 -0.93 6.30 -26.41 -0.17 -1.10 16 18 C -0.07 -0.60 7.46 37.82 0.28 -0.32 16 19 S -0.24 -3.18 22.72 -107.50 -2.44 -5.62 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 24 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 25 H 0.10 1.16 6.88 -51.93 -0.36 0.80 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -31.77 272.93 -7.68 -39.45 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -4.13 Total: -4.75 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.25 Total: -5.88 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.69 Total: -18.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.44 Total: -5.62 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.77 -7.68 -39.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379352174.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.894 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds