Wall clock time and date at job start Sun Mar 29 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99983 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99870 * 180.02562 * 12 11 10 15 15 H 1.08998 * 110.70117 * 338.30674 * 14 12 11 16 16 C 1.54257 * 110.78417 * 214.99523 * 14 12 11 17 17 C 1.52333 * 112.59153 * 217.19672 * 16 14 12 18 18 C 1.54263 * 112.58444 * 0.02562 * 17 16 14 19 19 S 1.83955 * 110.78924 * 101.83873 * 14 12 11 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 24 24 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 25 25 H 1.08996 * 108.87489 * 338.02047 * 16 14 12 26 26 H 1.09005 * 108.86961 * 96.52206 * 16 14 12 27 27 H 1.09000 * 108.87000 * 120.82065 * 17 16 14 28 28 H 1.08997 * 108.87010 * 239.32821 * 17 16 14 29 29 H 1.09003 * 110.78521 * 142.80016 * 18 17 16 30 30 H 1.09003 * 110.78705 * 266.25312 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9195 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5663 -7.3880 -0.0019 15 1 0.5468 -7.3013 0.3739 16 6 2.3696 -8.4123 0.8258 17 6 2.3441 -9.8074 0.2146 18 6 1.5215 -9.8682 -1.0890 19 16 1.5861 -8.1294 -1.6853 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 -0.8905 24 1 2.8720 -3.6043 0.8894 25 1 3.4042 -8.0765 0.8945 26 1 1.9485 -8.4620 1.8300 27 1 3.3670 -10.1172 0.0003 28 1 1.9105 -10.5004 0.9356 29 1 1.9865 -10.5419 -1.8088 30 1 0.4938 -10.1685 -0.8843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379352174.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:59 Heat of formation + Delta-G solvation = -122.057545 kcal Electronic energy + Delta-G solvation = -13617.970257 eV Core-core repulsion = 11117.164779 eV Total energy + Delta-G solvation = -2500.805478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.61851 -38.09632 -36.66793 -35.49016 -32.55846 -31.24151 -27.50749 -26.48354 -23.50481 -22.60572 -21.13717 -19.33545 -18.41669 -18.27889 -17.54746 -17.16637 -16.54760 -15.78360 -15.27411 -15.16560 -14.57547 -14.41591 -13.87428 -13.61289 -13.25189 -13.06296 -12.73807 -12.65078 -12.60129 -12.53717 -11.98532 -11.61352 -11.56778 -11.47209 -11.39995 -11.03412 -10.64180 -8.94344 -8.29147 -6.42930 0.07713 1.14938 1.38987 1.41106 1.42999 1.54401 1.63758 2.38420 3.05295 3.25751 3.53316 3.81302 4.01664 4.10931 4.14415 4.15926 4.19757 4.52259 4.62600 4.73910 4.95688 5.04688 5.15041 5.18715 5.41434 5.44888 5.69870 6.02894 6.55226 6.70652 7.27158 8.83829 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.069677 B = 0.004595 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.757590 B = 6091.787916 C = 6219.446924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.361 6.361 12 C 0.472 3.528 13 O -0.523 6.523 14 C -0.034 4.034 15 H 0.144 0.856 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.050 4.050 19 S -0.316 6.316 20 H 0.269 0.731 21 H 0.004 0.996 22 H 0.009 0.991 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 -20.705 1.613 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.277 6.277 12 C 0.313 3.687 13 O -0.413 6.413 14 C -0.163 4.163 15 H 0.161 0.839 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.197 4.197 19 S -0.090 6.090 20 H 0.077 0.923 21 H 0.023 0.977 22 H 0.028 0.972 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.532 -20.065 0.481 20.229 hybrid contribution 0.236 0.837 0.879 1.237 sum 2.767 -19.228 1.360 19.473 Atomic orbital electron populations 1.70102 1.07853 1.28302 1.50309 1.25979 0.95852 1.03461 0.93944 0.85245 0.78856 0.77915 0.78091 1.18625 1.20057 1.19846 1.21390 0.93712 0.91144 1.52657 0.91661 1.18996 0.94328 0.90589 0.96754 1.23239 0.95166 0.78766 1.01122 1.86517 1.42576 1.15846 1.82805 1.23357 0.86253 0.87028 0.72047 1.90605 1.16407 1.88167 1.46104 1.23693 1.05042 0.90622 0.96940 0.83852 1.22204 1.00918 0.92585 1.00195 1.21990 1.02280 0.95360 0.96025 1.24481 1.05627 0.90078 0.99510 1.88628 1.98067 1.10889 1.11412 0.92261 0.97726 0.97211 0.92474 0.91597 0.90793 0.87373 0.89714 0.86836 0.85450 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.01 0.38 5.46 84.65 0.46 0.85 16 3 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.68 5.35 29.85 0.16 1.84 16 10 C 0.09 4.22 5.40 71.98 0.39 4.61 16 11 O -0.36 -15.33 10.22 -51.42 -0.53 -15.86 16 12 C 0.47 17.26 7.12 71.24 0.51 17.76 16 13 O -0.52 -21.38 15.58 21.98 0.34 -21.04 16 14 C -0.03 -0.88 3.82 30.27 0.12 -0.77 16 15 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 16 C -0.12 -2.21 5.89 30.80 0.18 -2.02 16 17 C -0.12 -1.35 6.30 30.80 0.19 -1.16 16 18 C -0.05 -0.64 7.46 72.41 0.54 -0.10 16 19 S -0.32 -8.18 22.72 -56.49 -1.28 -9.46 16 20 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 21 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 22 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 24 H 0.07 2.99 8.13 -2.39 -0.02 2.97 16 25 H 0.07 1.71 6.88 -2.39 -0.02 1.70 16 26 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.27 272.93 4.74 -65.53 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.12 Total: 1.11 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 2.78 Total: -10.57 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.76 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.18 Total: -36.90 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.28 Total: -9.46 kcal Total: -70.27 4.74 -65.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379352174.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.531 kcal (2) G-P(sol) polarization free energy of solvation -70.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds