Wall clock time and date at job start Sun Mar 29 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.81401 * 102.99894 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47171 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.51714 * 54.99941 * 13 12 11 15 15 C 1.53171 * 109.52250 * 175.12739 * 13 12 11 16 16 C 1.53184 * 109.03369 * 176.82369 * 15 13 12 17 17 C 1.53089 * 109.21469 * 303.11576 * 16 15 13 18 18 O 1.42910 * 109.41507 * 57.56871 * 17 16 15 19 19 C 1.42899 * 114.09855 * 298.84587 * 18 17 16 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 1.09007 * 109.47129 * 300.00188 * 12 11 10 26 26 H 1.08998 * 109.47169 * 59.99851 * 12 11 10 27 27 H 1.09005 * 109.54515 * 296.74995 * 15 13 12 28 28 H 1.08998 * 109.54643 * 57.01759 * 15 13 12 29 29 H 1.08997 * 109.53001 * 183.17093 * 16 15 13 30 30 H 1.09006 * 109.51914 * 63.04872 * 16 15 13 31 31 H 1.08997 * 109.47879 * 297.59242 * 17 16 15 32 32 H 1.08994 * 109.48569 * 177.55624 * 17 16 15 33 33 H 1.08995 * 109.48025 * 301.17511 * 19 18 17 34 34 H 1.09003 * 109.48815 * 181.14836 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 6 2.6652 -6.4702 0.0004 13 6 2.0545 -7.8730 0.0003 14 1 1.3685 -7.9714 -0.8410 15 6 3.1690 -8.9164 -0.1231 16 6 2.5534 -10.3168 -0.0422 17 6 1.7739 -10.4496 1.2687 18 8 0.7738 -9.4307 1.3320 19 6 1.2943 -8.1001 1.3096 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 3.2807 -6.3422 -0.8901 26 1 3.2820 -6.3421 0.8899 27 1 3.6776 -8.7954 -1.0795 28 1 3.8829 -8.7854 0.6901 29 1 3.3452 -11.0652 -0.0726 30 1 1.8779 -10.4669 -0.8844 31 1 2.4575 -10.3407 2.1107 32 1 1.2980 -11.4292 1.3111 33 1 1.9716 -7.9605 2.1521 34 1 0.4730 -7.3871 1.3815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379356032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:33 Heat of formation + Delta-G solvation = -84.940093 kcal Electronic energy + Delta-G solvation = -13742.642863 eV Core-core repulsion = 11379.280014 eV Total energy + Delta-G solvation = -2363.362850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.51130 -34.68673 -34.04620 -32.24904 -30.69962 -27.16667 -25.20677 -24.67415 -22.62032 -21.38883 -20.21404 -16.83084 -16.43404 -16.23664 -15.81157 -15.07145 -14.68624 -14.22709 -13.95790 -13.75014 -13.09791 -13.07003 -12.81389 -12.39863 -12.32665 -11.53854 -11.32101 -11.24352 -10.94243 -10.70562 -10.50870 -10.33576 -10.26495 -10.00544 -9.65390 -9.42723 -8.59279 -8.38474 -7.24560 -6.41671 -4.12783 2.08372 3.12753 3.41697 3.43451 3.62445 3.74631 4.51355 4.52446 4.58552 4.64068 4.70288 4.97124 5.18492 5.25102 5.33140 5.35881 5.43176 5.50087 5.59066 5.68860 5.78880 5.80474 5.87332 6.01586 6.04459 6.14370 6.57397 7.07102 7.26501 7.36311 8.07087 8.37583 8.80103 9.59674 10.98791 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077488 B = 0.004186 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.259861 B = 6687.949183 C = 6890.777086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.024 3.976 10 C -0.052 4.052 11 S -0.290 6.290 12 C -0.083 4.083 13 C -0.104 4.104 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.155 4.155 17 C 0.057 3.943 18 O -0.381 6.381 19 C 0.065 3.935 20 H 0.270 0.730 21 H 0.018 0.982 22 H 0.017 0.983 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.751 -19.034 1.023 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.899 3.101 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.069 0.931 9 C -0.014 4.014 10 C -0.199 4.199 11 S -0.062 6.062 12 C -0.231 4.231 13 C -0.124 4.124 14 H 0.106 0.894 15 C -0.154 4.154 16 C -0.193 4.193 17 C -0.020 4.020 18 O -0.300 6.300 19 C -0.012 4.012 20 H 0.081 0.919 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.262 -17.598 1.037 18.398 hybrid contribution 1.976 -1.412 -0.094 2.431 sum 7.239 -19.011 0.943 20.364 Atomic orbital electron populations 1.70766 1.06875 1.30815 1.45878 1.25893 0.96529 1.02694 0.93567 0.83508 0.74867 0.75149 0.76536 1.20620 1.21382 1.21372 1.21933 0.94250 0.91323 1.56818 0.93146 1.19024 0.94068 0.91055 0.97266 1.23529 1.01027 0.92123 1.03260 1.86876 1.17767 1.03558 1.98008 1.23287 0.99554 0.95654 1.04607 1.21558 0.97844 0.92420 1.00539 0.89402 1.21659 0.97335 0.93846 1.02549 1.22186 1.00364 0.97340 0.99373 1.22575 0.91297 0.91962 0.96116 1.87968 1.32825 1.14690 1.94500 1.22766 0.99452 0.83711 0.95260 0.91906 0.96416 0.96433 0.91304 0.91303 0.90238 0.90515 0.91233 0.91686 0.90896 0.90938 0.93348 0.89067 0.93133 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 3 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.60 -17.26 9.11 -34.44 -0.31 -17.58 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.02 0.64 4.29 -27.88 -0.12 0.52 16 10 C -0.05 -1.10 5.88 37.16 0.22 -0.88 16 11 S -0.29 -5.30 20.60 -107.50 -2.22 -7.52 16 12 C -0.08 -1.12 5.39 37.16 0.20 -0.92 16 13 C -0.10 -1.24 2.38 -90.49 -0.22 -1.46 16 14 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.08 5.32 -26.55 -0.14 -1.22 16 16 C -0.15 -1.30 6.13 -26.59 -0.16 -1.47 16 17 C 0.06 0.53 6.84 37.20 0.25 0.79 16 18 O -0.38 -4.89 10.77 -35.23 -0.38 -5.27 16 19 C 0.06 0.82 5.91 37.20 0.22 1.04 16 20 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 21 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 22 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 23 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 24 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 25 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.11 1.52 7.24 -51.93 -0.38 1.14 16 LS Contribution 288.88 15.07 4.35 4.35 Total: -1.00 -30.82 288.88 -8.50 -39.32 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.78 Total: -2.93 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -0.16 Total: -20.75 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.76 Total: -27.31 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.38 Total: -5.27 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.22 Total: -7.52 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.82 -8.50 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379356032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.621 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds