Wall clock time and date at job start Sun Mar 29 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.81401 * 102.99894 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47171 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.51714 * 54.99941 * 13 12 11 15 15 C 1.53171 * 109.52250 * 175.12739 * 13 12 11 16 16 C 1.53184 * 109.03369 * 176.82369 * 15 13 12 17 17 C 1.53089 * 109.21469 * 303.11576 * 16 15 13 18 18 O 1.42910 * 109.41507 * 57.56871 * 17 16 15 19 19 C 1.42899 * 114.09855 * 298.84587 * 18 17 16 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 1.09007 * 109.47129 * 300.00188 * 12 11 10 26 26 H 1.08998 * 109.47169 * 59.99851 * 12 11 10 27 27 H 1.09005 * 109.54515 * 296.74995 * 15 13 12 28 28 H 1.08998 * 109.54643 * 57.01759 * 15 13 12 29 29 H 1.08997 * 109.53001 * 183.17093 * 16 15 13 30 30 H 1.09006 * 109.51914 * 63.04872 * 16 15 13 31 31 H 1.08997 * 109.47879 * 297.59242 * 17 16 15 32 32 H 1.08994 * 109.48569 * 177.55624 * 17 16 15 33 33 H 1.08995 * 109.48025 * 301.17511 * 19 18 17 34 34 H 1.09003 * 109.48815 * 181.14836 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 6 2.6652 -6.4702 0.0004 13 6 2.0545 -7.8730 0.0003 14 1 1.3685 -7.9714 -0.8410 15 6 3.1690 -8.9164 -0.1231 16 6 2.5534 -10.3168 -0.0422 17 6 1.7739 -10.4496 1.2687 18 8 0.7738 -9.4307 1.3320 19 6 1.2943 -8.1001 1.3096 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 3.2807 -6.3422 -0.8901 26 1 3.2820 -6.3421 0.8899 27 1 3.6776 -8.7954 -1.0795 28 1 3.8829 -8.7854 0.6901 29 1 3.3452 -11.0652 -0.0726 30 1 1.8779 -10.4669 -0.8844 31 1 2.4575 -10.3407 2.1107 32 1 1.2980 -11.4292 1.3111 33 1 1.9716 -7.9605 2.1521 34 1 0.4730 -7.3871 1.3815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379356032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:33 Heat of formation + Delta-G solvation = -102.951925 kcal Electronic energy + Delta-G solvation = -13743.423915 eV Core-core repulsion = 11379.280014 eV Total energy + Delta-G solvation = -2364.143901 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.38150 -36.19939 -35.61630 -33.04613 -32.75172 -28.20086 -26.78961 -26.01794 -23.89818 -22.98760 -21.09102 -19.01616 -17.33418 -17.27533 -17.09766 -16.02759 -15.72007 -15.68264 -15.65544 -15.40225 -14.68656 -14.24234 -14.02340 -13.65302 -13.38526 -12.95598 -12.82255 -12.37558 -12.24726 -12.15366 -12.06416 -11.90861 -11.65202 -11.37690 -10.90467 -10.68642 -10.60012 -10.43892 -8.74570 -8.73117 -6.47377 0.67726 1.52817 1.61623 1.66788 1.81054 2.56073 2.89052 3.11263 3.62208 3.69698 3.79640 3.99253 4.09902 4.16541 4.19815 4.27331 4.37134 4.50768 4.54347 4.68294 4.69616 4.80006 4.89838 4.97930 5.04784 5.11784 5.17203 5.21381 5.33336 5.84479 6.09340 6.22549 6.46412 7.35924 8.65595 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077488 B = 0.004186 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.259861 B = 6687.949183 C = 6890.777086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.620 4.620 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.043 4.043 11 S -0.319 6.319 12 C -0.065 4.065 13 C -0.098 4.098 14 H 0.073 0.927 15 C -0.111 4.111 16 C -0.151 4.151 17 C 0.048 3.952 18 O -0.405 6.405 19 C 0.066 3.934 20 H 0.254 0.746 21 H -0.007 1.007 22 H -0.008 1.008 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 -20.189 1.046 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.235 4.235 3 Si 0.943 3.057 4 H -0.209 1.209 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.659 4.659 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.191 4.191 11 S -0.091 6.091 12 C -0.213 4.213 13 C -0.118 4.118 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.188 4.188 17 C -0.028 4.028 18 O -0.324 6.324 19 C -0.011 4.011 20 H 0.064 0.936 21 H 0.011 0.989 22 H 0.010 0.990 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.706 -18.781 1.059 20.328 hybrid contribution 1.197 -1.219 -0.090 1.711 sum 8.903 -20.000 0.969 21.914 Atomic orbital electron populations 1.70910 1.08111 1.29881 1.48204 1.27589 0.96523 1.07053 0.92326 0.82881 0.74072 0.70551 0.78240 1.20900 1.19104 1.19071 1.22386 0.94937 0.92524 1.56035 0.92277 1.18855 0.94418 0.92984 0.94812 1.23172 0.99784 0.92325 1.03833 1.86996 1.20418 1.03601 1.98130 1.23400 0.97690 0.94219 1.05961 1.21516 0.98560 0.92192 0.99572 0.90864 1.21667 0.96394 0.93236 1.03676 1.22175 1.00811 0.97371 0.98477 1.22853 0.91216 0.91586 0.97139 1.87935 1.34642 1.15125 1.94704 1.22653 0.98753 0.83656 0.96035 0.93630 0.98874 0.98959 0.90689 0.90592 0.88893 0.89041 0.90132 0.90445 0.88287 0.91627 0.92196 0.87550 0.92154 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.21 13.65 21.45 0.29 -58.92 16 2 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 3 Si 1.12 49.95 29.90 68.60 2.05 52.01 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.62 -35.74 9.11 25.60 0.23 -35.51 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.49 4.29 29.85 0.13 1.62 16 10 C -0.04 -1.84 5.88 71.98 0.42 -1.41 16 11 S -0.32 -11.69 20.60 -56.49 -1.16 -12.86 16 12 C -0.06 -1.62 5.39 71.98 0.39 -1.23 16 13 C -0.10 -2.18 2.38 -10.71 -0.03 -2.21 16 14 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.11 -1.72 5.32 30.71 0.16 -1.56 16 16 C -0.15 -2.07 6.13 30.69 0.19 -1.89 16 17 C 0.05 0.78 6.84 72.01 0.49 1.27 16 18 O -0.40 -9.95 10.77 -148.98 -1.60 -11.55 16 19 C 0.07 1.61 5.91 72.01 0.43 2.03 16 20 H 0.25 16.50 7.22 -92.71 -0.67 15.83 16 21 H -0.01 -0.41 8.01 -2.39 -0.02 -0.43 16 22 H -0.01 -0.46 8.01 -2.39 -0.02 -0.48 16 23 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 24 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.38 7.24 -2.39 -0.02 2.37 16 Total: -1.00 -67.70 288.88 3.60 -64.11 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.14 Total: 7.81 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.88 Total: -40.60 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.29 Total: -58.92 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.60 Total: -11.55 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.01 kcal Atomic # 16 Polarization: -11.69 SS G_CDS: -1.16 Total: -12.86 kcal Total: -67.70 3.60 -64.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379356032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.842 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds