Wall clock time and date at job start Sun Mar 29 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47168 * 300.00286 * 3 2 1 6 6 H 1.48501 * 109.47035 * 60.00591 * 3 2 1 7 7 C 1.37874 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47263 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.81398 * 103.00142 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47146 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.52356 * 305.00128 * 13 12 11 15 15 C 1.53185 * 109.57233 * 184.84250 * 13 12 11 16 16 C 1.53183 * 109.03189 * 183.08282 * 15 13 12 17 17 C 1.53089 * 109.16135 * 56.98342 * 16 15 13 18 18 O 1.42896 * 109.41625 * 302.38470 * 17 16 15 19 19 C 1.42900 * 114.09793 * 61.16321 * 18 17 16 20 20 H 0.97003 * 120.00227 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47097 * 59.99842 * 9 7 2 22 22 H 1.08997 * 109.46973 * 300.00080 * 9 7 2 23 23 H 1.08998 * 109.46717 * 59.99662 * 10 9 7 24 24 H 1.08997 * 109.46712 * 300.00163 * 10 9 7 25 25 H 1.08999 * 109.47157 * 59.99857 * 12 11 10 26 26 H 1.09001 * 109.47138 * 300.00216 * 12 11 10 27 27 H 1.08993 * 109.54147 * 302.94797 * 15 13 12 28 28 H 1.08994 * 109.54148 * 63.21891 * 15 13 12 29 29 H 1.08993 * 109.52144 * 297.07522 * 16 15 13 30 30 H 1.09004 * 109.51827 * 176.88441 * 16 15 13 31 31 H 1.09010 * 109.47660 * 182.40651 * 17 16 15 32 32 H 1.09000 * 109.48354 * 62.37268 * 17 16 15 33 33 H 1.08999 * 109.48607 * 178.86157 * 19 18 17 34 34 H 1.08998 * 109.49071 * 58.82892 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 6 2.6648 -6.4702 -0.0035 13 6 2.0540 -7.8730 -0.0025 14 1 1.3698 -7.9718 0.8403 15 6 3.1679 -8.9177 0.1173 16 6 2.5505 -10.3174 0.0396 17 6 1.7683 -10.4496 -1.2698 18 8 0.7691 -9.4299 -1.3312 19 6 1.2909 -8.0997 -1.3102 20 1 -0.4850 0.8400 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8725 -3.6047 0.8877 24 1 2.8711 -3.6039 -0.8922 25 1 3.2823 -6.3426 0.8856 26 1 3.2797 -6.3419 -0.8944 27 1 3.8793 -8.7872 -0.6981 28 1 3.6795 -8.7973 1.0722 29 1 1.8764 -10.4655 0.8831 30 1 3.3417 -11.0666 0.0684 31 1 1.2913 -11.4289 -1.3109 32 1 2.4503 -10.3416 -2.1132 33 1 0.4701 -7.3860 -1.3804 34 1 1.9666 -7.9607 -2.1541 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379356033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:35 Heat of formation + Delta-G solvation = -80.986746 kcal Electronic energy + Delta-G solvation = -13713.290270 eV Core-core repulsion = 11350.098850 eV Total energy + Delta-G solvation = -2363.191420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46628 -34.63241 -33.68045 -32.20301 -30.86049 -27.12419 -25.29389 -25.04871 -22.56062 -21.04537 -20.13939 -16.52374 -16.38045 -16.17725 -15.64542 -15.02217 -14.63698 -14.49241 -14.01966 -13.80477 -13.02023 -12.82566 -12.74921 -12.40091 -11.88554 -11.50114 -11.38036 -11.18281 -11.03325 -10.88868 -10.50491 -10.45534 -10.19659 -9.67323 -9.56963 -9.39315 -9.03914 -8.42544 -7.14171 -6.06099 -4.10719 2.17866 3.23544 3.28036 3.35738 3.39364 3.79249 4.41615 4.56996 4.63543 4.68827 4.74781 5.01823 5.23393 5.29491 5.29964 5.38708 5.47794 5.55103 5.63353 5.73727 5.84065 5.85079 5.99447 6.07703 6.18590 6.19618 6.73206 7.11679 7.57119 7.65781 7.90408 8.27583 8.94558 9.53274 11.04750 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077579 B = 0.004169 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.833639 B = 6714.712113 C = 6917.968162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.059 4.059 11 S -0.287 6.287 12 C -0.084 4.084 13 C -0.104 4.104 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.155 4.155 17 C 0.057 3.943 18 O -0.381 6.381 19 C 0.065 3.935 20 H 0.262 0.738 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -18.670 -1.029 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.206 4.206 11 S -0.059 6.059 12 C -0.233 4.233 13 C -0.123 4.123 14 H 0.106 0.894 15 C -0.154 4.154 16 C -0.193 4.193 17 C -0.020 4.020 18 O -0.300 6.300 19 C -0.012 4.012 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.840 -18.764 -1.041 19.406 hybrid contribution 2.150 1.265 0.089 2.496 sum 6.991 -17.500 -0.952 18.868 Atomic orbital electron populations 1.69982 1.06072 1.26759 1.50069 1.25013 0.94892 0.99308 0.95055 0.86470 0.79988 0.83460 0.77691 1.19717 1.20878 1.20877 1.21139 0.93019 0.90305 1.51665 0.92446 1.18914 0.93416 0.89288 0.98572 1.23679 1.01349 0.92590 1.03024 1.86917 1.17499 1.03479 1.97989 1.23286 0.99736 0.95757 1.04515 1.21557 0.97786 0.92477 1.00524 0.89410 1.21662 0.97375 0.93854 1.02513 1.22188 1.00322 0.97371 0.99385 1.22571 0.91313 0.91948 0.96118 1.87965 1.32801 1.14714 1.94517 1.22776 0.99473 0.83675 0.95285 0.92822 0.95508 0.95513 0.91479 0.91466 0.90315 0.90594 0.91710 0.91276 0.90939 0.90948 0.89123 0.93375 0.87381 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 10 C -0.06 -1.24 5.88 37.16 0.22 -1.02 16 11 S -0.29 -5.27 20.60 -107.50 -2.21 -7.48 16 12 C -0.08 -1.15 5.39 37.16 0.20 -0.95 16 13 C -0.10 -1.25 2.38 -90.48 -0.22 -1.46 16 14 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.09 5.32 -26.54 -0.14 -1.23 16 16 C -0.15 -1.32 6.14 -26.59 -0.16 -1.48 16 17 C 0.06 0.54 6.84 37.20 0.25 0.79 16 18 O -0.38 -4.92 10.76 -35.23 -0.38 -5.30 16 19 C 0.06 0.82 5.91 37.21 0.22 1.04 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 1.54 7.23 -51.93 -0.38 1.17 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 290.19 15.07 4.37 4.37 Total: -1.00 -30.06 290.19 -8.52 -38.58 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.84 Total: -3.68 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -0.18 Total: -16.88 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.38 Total: -5.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.21 Total: -7.48 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.06 -8.52 -38.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379356033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.411 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds