Wall clock time and date at job start Sun Mar 29 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47168 * 300.00286 * 3 2 1 6 6 H 1.48501 * 109.47035 * 60.00591 * 3 2 1 7 7 C 1.37874 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47263 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.81398 * 103.00142 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47146 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.52356 * 305.00128 * 13 12 11 15 15 C 1.53185 * 109.57233 * 184.84250 * 13 12 11 16 16 C 1.53183 * 109.03189 * 183.08282 * 15 13 12 17 17 C 1.53089 * 109.16135 * 56.98342 * 16 15 13 18 18 O 1.42896 * 109.41625 * 302.38470 * 17 16 15 19 19 C 1.42900 * 114.09793 * 61.16321 * 18 17 16 20 20 H 0.97003 * 120.00227 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47097 * 59.99842 * 9 7 2 22 22 H 1.08997 * 109.46973 * 300.00080 * 9 7 2 23 23 H 1.08998 * 109.46717 * 59.99662 * 10 9 7 24 24 H 1.08997 * 109.46712 * 300.00163 * 10 9 7 25 25 H 1.08999 * 109.47157 * 59.99857 * 12 11 10 26 26 H 1.09001 * 109.47138 * 300.00216 * 12 11 10 27 27 H 1.08993 * 109.54147 * 302.94797 * 15 13 12 28 28 H 1.08994 * 109.54148 * 63.21891 * 15 13 12 29 29 H 1.08993 * 109.52144 * 297.07522 * 16 15 13 30 30 H 1.09004 * 109.51827 * 176.88441 * 16 15 13 31 31 H 1.09010 * 109.47660 * 182.40651 * 17 16 15 32 32 H 1.09000 * 109.48354 * 62.37268 * 17 16 15 33 33 H 1.08999 * 109.48607 * 178.86157 * 19 18 17 34 34 H 1.08998 * 109.49071 * 58.82892 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 6 2.6648 -6.4702 -0.0035 13 6 2.0540 -7.8730 -0.0025 14 1 1.3698 -7.9718 0.8403 15 6 3.1679 -8.9177 0.1173 16 6 2.5505 -10.3174 0.0396 17 6 1.7683 -10.4496 -1.2698 18 8 0.7691 -9.4299 -1.3312 19 6 1.2909 -8.0997 -1.3102 20 1 -0.4850 0.8400 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8725 -3.6047 0.8877 24 1 2.8711 -3.6039 -0.8922 25 1 3.2823 -6.3426 0.8856 26 1 3.2797 -6.3419 -0.8944 27 1 3.8793 -8.7872 -0.6981 28 1 3.6795 -8.7973 1.0722 29 1 1.8764 -10.4655 0.8831 30 1 3.3417 -11.0666 0.0684 31 1 1.2913 -11.4289 -1.3109 32 1 2.4503 -10.3416 -2.1132 33 1 0.4701 -7.3860 -1.3804 34 1 1.9666 -7.9607 -2.1541 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379356033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:35 Heat of formation + Delta-G solvation = -98.345433 kcal Electronic energy + Delta-G solvation = -13714.042999 eV Core-core repulsion = 11350.098850 eV Total energy + Delta-G solvation = -2363.944149 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34334 -35.78941 -35.56487 -33.01253 -32.90518 -28.19666 -27.21419 -25.97975 -23.67879 -22.74886 -21.04295 -18.68202 -17.27074 -17.12312 -17.02834 -16.51453 -15.95029 -15.54816 -15.43201 -15.25742 -14.43715 -14.05340 -13.85902 -13.57282 -13.34546 -13.15027 -12.93692 -12.43326 -12.26007 -12.12733 -12.02448 -11.82286 -11.63764 -11.32738 -11.08356 -10.76603 -10.62285 -10.39662 -8.63159 -8.23861 -6.37738 0.77959 1.40927 1.41338 1.54844 1.77980 2.40032 2.93048 3.09476 3.67517 3.74736 3.84061 4.02548 4.21227 4.25651 4.31528 4.38321 4.42285 4.54659 4.59942 4.72564 4.84114 4.87044 4.93572 5.01955 5.08048 5.21093 5.36953 5.37486 5.48911 5.73158 6.10220 6.26310 6.77020 7.32056 8.88237 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077579 B = 0.004169 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.833639 B = 6714.712113 C = 6917.968162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.043 3.957 10 C -0.048 4.048 11 S -0.321 6.321 12 C -0.065 4.065 13 C -0.099 4.099 14 H 0.072 0.928 15 C -0.111 4.111 16 C -0.151 4.151 17 C 0.048 3.952 18 O -0.405 6.405 19 C 0.066 3.934 20 H 0.266 0.734 21 H -0.004 1.004 22 H -0.005 1.005 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.673 -19.646 -1.056 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.005 3.995 10 C -0.196 4.196 11 S -0.093 6.093 12 C -0.214 4.214 13 C -0.118 4.118 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.188 4.188 17 C -0.028 4.028 18 O -0.324 6.324 19 C -0.011 4.011 20 H 0.074 0.926 21 H 0.014 0.986 22 H 0.014 0.986 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.243 -19.749 -1.067 21.062 hybrid contribution 1.369 1.422 0.087 1.976 sum 8.612 -18.327 -0.980 20.273 Atomic orbital electron populations 1.70124 1.08024 1.28017 1.51025 1.26041 0.95787 1.03610 0.94336 0.85281 0.79060 0.78145 0.77830 1.18214 1.20298 1.20307 1.21588 0.93712 0.91391 1.51500 0.91433 1.18692 0.93736 0.91586 0.95531 1.23307 1.00037 0.92484 1.03795 1.87049 1.20352 1.03803 1.98127 1.23382 0.97820 0.94271 1.05884 1.21515 0.98500 0.92293 0.99538 0.90907 1.21668 0.96432 0.93234 1.03645 1.22176 1.00763 0.97414 0.98485 1.22848 0.91234 0.91565 0.97145 1.87932 1.34622 1.15157 1.94722 1.22661 0.98770 0.83606 0.96071 0.92559 0.98576 0.98649 0.90656 0.90544 0.88949 0.89095 0.90462 0.90172 0.91641 0.88336 0.87610 0.92216 0.89895 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 9 C 0.04 2.33 4.98 29.85 0.15 2.48 16 10 C -0.05 -2.04 5.88 71.98 0.42 -1.62 16 11 S -0.32 -11.87 20.60 -56.49 -1.16 -13.04 16 12 C -0.07 -1.65 5.39 71.98 0.39 -1.27 16 13 C -0.10 -2.21 2.38 -10.70 -0.03 -2.24 16 14 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.11 -1.75 5.32 30.72 0.16 -1.59 16 16 C -0.15 -2.11 6.14 30.69 0.19 -1.92 16 17 C 0.05 0.79 6.84 72.01 0.49 1.28 16 18 O -0.41 -10.07 10.76 -148.98 -1.60 -11.68 16 19 C 0.07 1.62 5.91 72.01 0.43 2.05 16 20 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 21 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 22 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 23 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 24 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 2.43 7.23 -2.39 -0.02 2.41 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -66.10 290.19 3.48 -62.61 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.04 Total: 6.24 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 2.90 Total: -32.99 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.60 Total: -11.68 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -11.87 SS G_CDS: -1.16 Total: -13.04 kcal Total: -66.10 3.48 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379356033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.732 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds