Wall clock time and date at job start Sun Mar 29 2020 21:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 O 1.45207 * 109.46782 * 120.00091 * 2 1 3 5 5 C 1.34223 * 116.99684 * 269.99359 * 4 2 1 6 6 O 1.20830 * 120.00380 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00053 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47639 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00071 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00345 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99457 * 180.02562 * 9 8 7 12 12 N 1.31627 * 120.00466 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99526 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47446 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47312 * 120.00044 * 13 11 9 16 16 H 1.48499 * 109.46907 * 239.99611 * 13 11 9 17 17 C 1.53001 * 109.47252 * 239.99683 * 2 1 3 18 18 C 1.53000 * 117.50223 * 180.02562 * 17 2 1 19 19 C 1.52997 * 117.49889 * 111.37590 * 17 2 1 20 20 H 1.08994 * 109.46791 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46713 * 300.00166 * 1 2 3 22 22 H 1.08997 * 109.46835 * 60.00324 * 1 2 3 23 23 H 1.09003 * 109.47234 * 300.00598 * 7 5 4 24 24 H 1.08999 * 109.47224 * 60.00076 * 7 5 4 25 25 H 0.96999 * 120.00235 * 180.02562 * 12 11 9 26 26 H 1.09002 * 115.55911 * 325.69018 * 17 2 1 27 27 H 1.08990 * 117.49990 * 145.01974 * 18 17 2 28 28 H 1.09004 * 117.49237 * 359.97438 * 18 17 2 29 29 H 1.08999 * 117.49685 * 0.02562 * 19 17 2 30 30 H 1.08999 * 117.52022 * 214.97106 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9975 1.2517 2.2506 7 6 2.7193 -0.5770 3.5492 8 16 2.8897 0.6841 4.8363 9 6 3.4747 -0.3130 6.1660 10 1 3.6190 -1.3736 6.0228 11 6 3.7491 0.2647 7.3979 12 7 3.5728 1.5573 7.5727 13 14 4.3686 -0.7925 8.8079 14 1 4.4807 -2.2029 8.3570 15 1 5.7015 -0.3044 9.2441 16 1 3.4156 -0.7106 9.9438 17 6 2.0401 -0.7213 -1.2492 18 6 3.5551 -0.8287 -1.4340 19 6 2.7419 0.1225 -2.3151 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.0104 -1.3372 3.8774 24 1 3.6884 -1.0400 3.3632 25 1 3.7649 1.9611 8.4335 26 1 1.4311 -1.5584 -1.5905 27 1 3.9425 -1.7361 -1.8970 28 1 4.1884 -0.3851 -0.6657 29 1 2.8407 1.1914 -2.1262 30 1 2.5951 -0.1593 -3.3578 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379363542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:53 Heat of formation + Delta-G solvation = -72.760520 kcal Electronic energy + Delta-G solvation = -13597.011704 eV Core-core repulsion = 11098.343906 eV Total energy + Delta-G solvation = -2498.667798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.18250 -37.69149 -35.65929 -32.48121 -31.46657 -29.35809 -25.56603 -24.26896 -22.52067 -21.21278 -20.28386 -17.93136 -17.23158 -16.25241 -15.71493 -15.26406 -14.84391 -14.41023 -14.15525 -13.37792 -12.95738 -12.74670 -12.61849 -12.03103 -11.88604 -11.71641 -11.10203 -11.09138 -11.06288 -10.79314 -10.77124 -10.45762 -10.16344 -9.89798 -9.85897 -9.11919 -8.34358 -6.59478 -6.26990 -3.99376 2.61565 2.70396 3.19995 3.23083 3.29297 3.45694 3.83091 4.15320 4.40331 4.69225 4.80130 4.96246 5.06964 5.09017 5.22177 5.33727 5.45405 5.46973 5.69705 5.80113 5.80502 5.85520 5.92453 5.98954 6.10068 6.14676 6.79241 7.56235 8.22914 8.31175 9.18714 10.80620 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.056818 B = 0.005093 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.680897 B = 5496.771907 C = 5651.605420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 H 0.085 0.915 4 O -0.353 6.353 5 C 0.478 3.522 6 O -0.490 6.490 7 C -0.129 4.129 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.076 0.924 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.922 3.078 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.155 4.155 18 C -0.168 4.168 19 C -0.172 4.172 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.269 0.731 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -5.296 -15.889 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.058 3.942 3 H 0.103 0.897 4 O -0.271 6.271 5 C 0.319 3.681 6 O -0.376 6.376 7 C -0.276 4.276 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.748 3.252 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.173 4.173 18 C -0.205 4.205 19 C -0.209 4.209 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.074 -3.660 -15.849 16.554 hybrid contribution 0.570 -1.897 0.910 2.179 sum -2.504 -5.557 -14.940 16.135 Atomic orbital electron populations 1.22147 0.94070 1.02905 1.03084 1.22158 0.94367 0.96348 0.81354 0.89707 1.86592 1.77483 1.42799 1.20273 1.23310 0.74231 0.85942 0.84587 1.90649 1.47005 1.16397 1.83552 1.23292 1.04486 1.05733 0.94134 1.85403 1.86716 1.08883 1.02359 1.22890 1.51547 0.96532 0.97367 0.90548 1.25002 0.94952 0.95375 0.98183 1.70021 1.45527 1.10027 1.24701 0.86071 0.78471 0.79926 0.80765 1.19501 1.20505 1.20508 1.22310 0.96281 1.02653 0.96089 1.22895 0.93321 1.01617 1.02695 1.23047 1.03972 0.97905 0.95964 0.91633 0.91580 0.90864 0.87991 0.88010 0.92135 0.86956 0.88441 0.88452 0.88509 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.53 37.16 0.35 -1.60 16 2 C 0.11 1.53 2.76 -26.73 -0.07 1.46 16 3 H 0.08 1.26 6.91 -51.93 -0.36 0.90 16 4 O -0.35 -5.83 9.80 -39.24 -0.38 -6.22 16 5 C 0.48 9.39 7.95 36.00 0.29 9.67 16 6 O -0.49 -10.90 15.08 -18.75 -0.28 -11.18 16 7 C -0.13 -2.67 6.27 36.00 0.23 -2.45 16 8 S -0.06 -1.61 20.58 -107.50 -2.21 -3.83 16 9 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 10 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 13 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.16 -1.67 5.40 -90.62 -0.49 -2.16 16 18 C -0.17 -1.76 10.16 -26.71 -0.27 -2.03 16 19 C -0.17 -1.57 10.18 -26.71 -0.27 -1.84 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.10 1.97 8.14 -51.91 -0.42 1.55 16 24 H 0.10 1.97 8.14 -51.92 -0.42 1.54 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.11 1.06 8.11 -51.93 -0.42 0.64 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 0.89 8.05 -51.93 -0.42 0.48 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -31.75 281.11 -7.10 -38.85 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.12 Total: -1.16 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.04 Total: -11.77 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.73 Total: -25.14 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.67 Total: -17.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.75 -7.10 -38.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379363542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.908 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds