Wall clock time and date at job start Sun Mar 29 2020 21:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 O 1.45207 * 109.46782 * 120.00091 * 2 1 3 5 5 C 1.34223 * 116.99684 * 269.99359 * 4 2 1 6 6 O 1.20830 * 120.00380 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00053 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47639 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00071 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00345 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99457 * 180.02562 * 9 8 7 12 12 N 1.31627 * 120.00466 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99526 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47446 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47312 * 120.00044 * 13 11 9 16 16 H 1.48499 * 109.46907 * 239.99611 * 13 11 9 17 17 C 1.53001 * 109.47252 * 239.99683 * 2 1 3 18 18 C 1.53000 * 117.50223 * 180.02562 * 17 2 1 19 19 C 1.52997 * 117.49889 * 111.37590 * 17 2 1 20 20 H 1.08994 * 109.46791 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46713 * 300.00166 * 1 2 3 22 22 H 1.08997 * 109.46835 * 60.00324 * 1 2 3 23 23 H 1.09003 * 109.47234 * 300.00598 * 7 5 4 24 24 H 1.08999 * 109.47224 * 60.00076 * 7 5 4 25 25 H 0.96999 * 120.00235 * 180.02562 * 12 11 9 26 26 H 1.09002 * 115.55911 * 325.69018 * 17 2 1 27 27 H 1.08990 * 117.49990 * 145.01974 * 18 17 2 28 28 H 1.09004 * 117.49237 * 359.97438 * 18 17 2 29 29 H 1.08999 * 117.49685 * 0.02562 * 19 17 2 30 30 H 1.08999 * 117.52022 * 214.97106 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9975 1.2517 2.2506 7 6 2.7193 -0.5770 3.5492 8 16 2.8897 0.6841 4.8363 9 6 3.4747 -0.3130 6.1660 10 1 3.6190 -1.3736 6.0228 11 6 3.7491 0.2647 7.3979 12 7 3.5728 1.5573 7.5727 13 14 4.3686 -0.7925 8.8079 14 1 4.4807 -2.2029 8.3570 15 1 5.7015 -0.3044 9.2441 16 1 3.4156 -0.7106 9.9438 17 6 2.0401 -0.7213 -1.2492 18 6 3.5551 -0.8287 -1.4340 19 6 2.7419 0.1225 -2.3151 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.0104 -1.3372 3.8774 24 1 3.6884 -1.0400 3.3632 25 1 3.7649 1.9611 8.4335 26 1 1.4311 -1.5584 -1.5905 27 1 3.9425 -1.7361 -1.8970 28 1 4.1884 -0.3851 -0.6657 29 1 2.8407 1.1914 -2.1262 30 1 2.5951 -0.1593 -3.3578 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379363542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:52 Heat of formation + Delta-G solvation = -91.071586 kcal Electronic energy + Delta-G solvation = -13597.805732 eV Core-core repulsion = 11098.343906 eV Total energy + Delta-G solvation = -2499.461826 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.62137 -38.77476 -36.96395 -34.62053 -32.61479 -30.92951 -27.72579 -25.31832 -23.30907 -22.50740 -21.40903 -19.90997 -18.75908 -17.59205 -17.18515 -16.90316 -16.30956 -15.97487 -15.52433 -14.69703 -14.56997 -14.28635 -13.73869 -13.41842 -13.19826 -12.96960 -12.92087 -12.64675 -12.46097 -12.08275 -11.90798 -11.75515 -11.66729 -11.18477 -11.16685 -11.08844 -10.38898 -8.74995 -8.38349 -6.18395 1.00860 1.12539 1.40774 1.42011 1.56138 1.84382 2.23175 2.88988 2.96900 3.27001 3.49305 3.79779 3.80640 3.99267 4.08792 4.16218 4.26093 4.41942 4.42919 4.72420 4.75454 4.80821 4.99077 5.07873 5.20428 5.21844 5.39185 5.40717 6.17621 6.70685 7.03493 8.71307 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.056818 B = 0.005093 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.680897 B = 5496.771907 C = 5651.605420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.103 3.897 3 H 0.067 0.933 4 O -0.346 6.346 5 C 0.486 3.514 6 O -0.522 6.522 7 C -0.109 4.109 8 S -0.138 6.138 9 C -0.548 4.548 10 H 0.086 0.914 11 C 0.017 3.983 12 N -0.910 5.910 13 Si 1.001 2.999 14 H -0.257 1.257 15 H -0.273 1.273 16 H -0.273 1.273 17 C -0.161 4.161 18 C -0.179 4.179 19 C -0.155 4.155 20 H 0.079 0.921 21 H 0.041 0.959 22 H 0.099 0.901 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.273 0.727 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 -7.309 -16.971 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.085 0.915 4 O -0.263 6.263 5 C 0.329 3.671 6 O -0.411 6.411 7 C -0.257 4.257 8 S 0.089 5.911 9 C -0.696 4.696 10 H 0.104 0.896 11 C -0.188 4.188 12 N -0.547 5.547 13 Si 0.822 3.178 14 H -0.181 1.181 15 H -0.198 1.198 16 H -0.198 1.198 17 C -0.179 4.179 18 C -0.216 4.216 19 C -0.192 4.192 20 H 0.098 0.902 21 H 0.061 0.939 22 H 0.118 0.882 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.134 0.866 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.036 -5.688 -16.960 18.145 hybrid contribution 0.523 -1.273 1.090 1.756 sum -2.513 -6.961 -15.870 17.511 Atomic orbital electron populations 1.22148 0.92569 1.03859 1.03215 1.22541 0.95700 0.95788 0.81112 0.91509 1.86564 1.77061 1.42415 1.20291 1.22998 0.73629 0.85394 0.85081 1.90642 1.48540 1.17754 1.84170 1.23090 1.06136 1.03729 0.92744 1.85520 1.87090 1.13150 1.05382 1.23230 1.51653 0.96908 0.97811 0.89639 1.26121 0.94799 0.96728 1.01187 1.70168 1.46677 1.12149 1.25678 0.84873 0.77874 0.78346 0.76662 1.18058 1.19819 1.19825 1.22347 0.96668 1.03696 0.95184 1.22953 0.92816 1.02890 1.02947 1.23156 1.01796 0.97378 0.96828 0.90215 0.93942 0.88247 0.86153 0.86217 0.91816 0.84916 0.86586 0.90623 0.89037 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.53 71.98 0.69 -2.88 16 2 C 0.10 2.69 2.76 30.60 0.08 2.78 16 3 H 0.07 2.00 6.91 -2.39 -0.02 1.98 16 4 O -0.35 -11.13 9.80 -51.35 -0.50 -11.63 16 5 C 0.49 19.15 7.95 71.24 0.57 19.71 16 6 O -0.52 -23.85 15.08 21.95 0.33 -23.52 16 7 C -0.11 -4.48 6.27 71.24 0.45 -4.03 16 8 S -0.14 -7.62 20.58 -56.49 -1.16 -8.78 16 9 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 10 H 0.09 4.52 7.80 -2.91 -0.02 4.49 16 11 C 0.02 0.94 5.49 84.86 0.47 1.41 16 12 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 13 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 14 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 C -0.16 -3.08 5.40 -10.79 -0.06 -3.14 16 18 C -0.18 -3.41 10.16 30.61 0.31 -3.09 16 19 C -0.15 -2.43 10.18 30.61 0.31 -2.12 16 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 24 H 0.12 4.51 8.14 -2.40 -0.02 4.49 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.13 2.03 8.11 -2.39 -0.02 2.01 16 27 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 30 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.46 281.11 5.56 -63.91 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.12 Total: 11.53 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 3.46 Total: -21.78 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.29 Total: -54.89 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.17 Total: -35.15 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.16 Total: -8.78 kcal Total: -69.46 5.56 -63.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379363542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.164 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds