Wall clock time and date at job start Sun Mar 29 2020 21:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47001 * 210.60310 * 3 2 1 5 5 C 1.36871 * 120.00208 * 93.09518 * 4 3 2 6 6 H 1.07996 * 119.99890 * 220.93922 * 5 4 3 7 7 C 1.39045 * 120.00124 * 40.66811 * 5 4 3 8 8 N 1.31364 * 120.00598 * 209.63247 * 7 5 4 9 9 Si 1.86805 * 119.99862 * 29.62927 * 7 5 4 10 10 H 1.48505 * 109.47088 * 92.92982 * 9 7 5 11 11 H 1.48500 * 109.47423 * 212.92653 * 9 7 5 12 12 H 1.48501 * 109.47371 * 332.93177 * 9 7 5 13 13 C 1.34775 * 119.99421 * 273.09552 * 4 3 2 14 14 O 1.21586 * 120.00264 * 6.61028 * 13 4 3 15 15 C 1.47723 * 119.99615 * 186.61181 * 13 4 3 16 16 C 1.40090 * 120.56280 * 205.56961 * 15 13 4 17 17 C 1.38338 * 118.28236 * 179.71522 * 16 15 13 18 18 C 1.38372 * 119.30700 * 0.59391 * 17 16 15 19 19 N 1.31933 * 121.09794 * 359.66161 * 18 17 16 20 20 C 1.31690 * 121.88153 * 0.02562 * 19 18 17 21 21 H 4.40644 * 5.51522 * 179.97438 * 4 1 2 22 22 H 1.08996 * 109.47131 * 90.59935 * 3 2 1 23 23 H 1.09003 * 109.46533 * 330.59526 * 3 2 1 24 24 H 0.96998 * 120.00079 * 179.97438 * 8 7 5 25 25 H 1.07998 * 120.85890 * 359.96329 * 16 15 13 26 26 H 1.08000 * 120.35099 * 180.27609 * 17 16 15 27 27 H 1.08007 * 119.45192 * 179.68039 * 18 17 16 28 28 H 1.07995 * 119.71414 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1898 0.7032 5 6 3.4223 1.1244 2.0395 6 1 3.1447 1.9387 2.6923 7 6 4.0677 0.0070 2.5576 8 7 3.8503 -0.3600 3.8001 9 14 5.2440 -0.9723 1.4868 10 1 6.6272 -0.4682 1.6815 11 1 5.1819 -2.4066 1.8667 12 1 4.8582 -0.8208 0.0608 13 6 3.2984 2.3480 0.0341 14 8 2.9302 2.4405 -1.1210 15 6 3.9263 3.5052 0.7041 16 6 3.6474 4.8111 0.2806 17 6 4.2568 5.8600 0.9455 18 6 5.1235 5.5881 1.9893 19 7 5.3718 4.3475 2.3633 20 6 4.8119 3.3158 1.7663 21 1 -1.0502 -0.0002 -0.0003 22 1 3.0093 0.0116 -1.0276 23 1 3.0096 -0.8945 0.5046 24 1 4.3002 -1.1397 4.1613 25 1 2.9710 4.9944 -0.5411 26 1 4.0622 6.8803 0.6497 27 1 5.6046 6.4051 2.5067 28 1 5.0405 2.3148 2.1010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379712525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:06 Heat of formation + Delta-G solvation = 58.204372 kcal Electronic energy + Delta-G solvation = -15430.963805 eV Core-core repulsion = 12834.823870 eV Total energy + Delta-G solvation = -2596.139935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.53548 -39.94343 -37.21505 -34.62015 -33.70028 -33.28737 -32.14656 -28.61420 -27.17868 -24.71299 -24.25556 -21.31656 -20.30315 -19.04167 -18.05986 -17.62919 -17.51185 -16.51014 -16.40497 -15.91544 -15.06985 -14.92692 -14.67173 -14.61918 -14.14922 -13.96196 -13.83874 -13.02082 -12.91021 -12.60454 -11.98485 -11.57525 -11.29926 -11.06033 -10.80821 -10.76547 -10.25043 -9.98831 -9.91332 -8.64193 -6.20688 -0.10861 0.38159 1.23390 1.35595 1.42503 1.60562 1.92247 1.93423 2.15814 2.68994 2.78629 3.07994 3.59378 3.68336 4.01324 4.04739 4.12809 4.23856 4.36414 4.46772 4.65444 4.95706 5.05023 5.17284 5.26464 5.35709 5.82085 5.94660 6.10871 6.69669 6.81851 7.07915 7.21676 7.59362 8.48174 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.012041 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.253750 B = 2324.780061 C = 3100.390902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.230 4.230 3 C 0.210 3.790 4 N -0.453 5.453 5 C -0.359 4.359 6 H 0.075 0.925 7 C 0.047 3.953 8 N -0.866 5.866 9 Si 0.902 3.098 10 H -0.266 1.266 11 H -0.266 1.266 12 H -0.245 1.245 13 C 0.518 3.482 14 O -0.610 6.610 15 C -0.186 4.186 16 C -0.043 4.043 17 C -0.174 4.174 18 C 0.105 3.895 19 N -0.521 5.521 20 C 0.135 3.865 21 H 0.256 0.744 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.286 0.714 25 H 0.143 0.857 26 H 0.181 0.819 27 H 0.194 0.806 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 5.919 -4.199 7.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.232 4.232 3 C 0.088 3.912 4 N -0.172 5.172 5 C -0.485 4.485 6 H 0.092 0.908 7 C -0.162 4.162 8 N -0.499 5.499 9 Si 0.723 3.277 10 H -0.192 1.192 11 H -0.190 1.190 12 H -0.168 1.168 13 C 0.309 3.691 14 O -0.497 6.497 15 C -0.191 4.191 16 C -0.069 4.069 17 C -0.193 4.193 18 C -0.052 4.052 19 N -0.231 5.231 20 C -0.021 4.021 21 H 0.273 0.727 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.160 0.840 26 H 0.198 0.802 27 H 0.211 0.789 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.096 5.626 -3.869 6.915 hybrid contribution -0.355 -0.669 -0.637 0.990 sum 0.741 4.957 -4.506 6.739 Atomic orbital electron populations 1.25710 0.96595 0.98482 0.99955 1.24022 0.95727 1.02162 1.01245 1.18795 0.84653 0.89650 0.98103 1.43539 1.56113 1.08477 1.09065 1.18678 1.40978 1.07500 0.81388 0.90755 1.25875 0.96986 0.96794 0.96556 1.69902 1.37703 1.24849 1.17400 0.86529 0.80769 0.78978 0.81378 1.19178 1.19007 1.16806 1.18582 0.80822 0.84515 0.85189 1.90604 1.55887 1.84621 1.18555 1.20899 1.02861 0.94796 1.00507 1.21886 0.96568 0.90812 0.97676 1.22414 0.98463 1.01026 0.97443 1.23677 0.93684 0.94254 0.93577 1.67884 1.25017 1.00600 1.29561 1.24010 0.89692 0.99451 0.88924 0.72747 0.88933 0.88920 0.90362 0.83964 0.80217 0.78896 0.81203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.86 19.25 74.32 1.43 -5.43 15 2 C -0.23 -9.98 13.65 31.13 0.42 -9.56 15 3 C 0.21 9.45 3.97 84.57 0.34 9.78 15 4 N -0.45 -22.15 2.05 -648.84 -1.33 -23.48 15 5 C -0.36 -18.49 6.23 84.10 0.52 -17.96 15 6 H 0.07 4.23 6.93 -2.91 -0.02 4.21 15 7 C 0.05 2.36 4.85 84.96 0.41 2.77 15 8 N -0.87 -45.95 13.95 21.68 0.30 -45.65 15 9 Si 0.90 38.15 26.36 68.60 1.81 39.96 15 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 11 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 12 H -0.24 -9.95 5.67 99.48 0.56 -9.39 15 13 C 0.52 25.06 7.41 86.75 0.64 25.71 15 14 O -0.61 -31.15 16.40 -3.99 -0.07 -31.21 15 15 C -0.19 -7.99 5.57 -20.00 -0.11 -8.10 15 16 C -0.04 -1.48 9.73 22.74 0.22 -1.25 15 17 C -0.17 -4.58 10.10 22.33 0.23 -4.35 15 18 C 0.10 2.98 11.17 84.71 0.95 3.93 15 19 N -0.52 -19.96 10.35 -194.68 -2.01 -21.97 15 20 C 0.14 5.87 9.14 85.04 0.78 6.65 15 21 H 0.26 6.32 7.80 -4.41 -0.03 6.28 15 22 H 0.09 4.02 7.62 -2.39 -0.02 4.00 15 23 H 0.09 4.03 4.60 -2.39 -0.01 4.02 15 24 H 0.29 13.98 8.31 -92.71 -0.77 13.21 15 25 H 0.14 4.62 7.93 -2.91 -0.02 4.59 15 26 H 0.18 2.95 8.06 -2.91 -0.02 2.92 15 27 H 0.19 3.66 8.06 -2.91 -0.02 3.64 15 28 H 0.17 8.14 5.18 -2.91 -0.02 8.13 15 Total: -1.00 -64.65 254.55 5.57 -59.08 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.04 Total: 21.09 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.83 Total: 2.19 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -3.04 Total: -91.10 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.07 Total: -31.21 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.81 Total: 39.96 kcal Total: -64.65 5.57 -59.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379712525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.281 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds