Wall clock time and date at job start Sun Mar 29 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47198 * 65.75111 * 3 2 1 5 5 C 1.36781 * 119.99950 * 263.97969 * 4 3 2 6 6 H 1.08005 * 119.99948 * 140.84481 * 5 4 3 7 7 C 1.39102 * 120.00144 * 320.84529 * 5 4 3 8 8 N 1.31323 * 120.00368 * 163.62530 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 343.62266 * 7 5 4 10 10 H 1.48496 * 109.47232 * 89.61708 * 9 7 5 11 11 H 1.48493 * 109.47516 * 209.62328 * 9 7 5 12 12 H 1.48503 * 109.46967 * 329.62190 * 9 7 5 13 13 C 1.34773 * 120.00154 * 83.97642 * 4 3 2 14 14 O 1.21570 * 120.00383 * 182.60377 * 13 4 3 15 15 C 1.48014 * 119.99713 * 2.60190 * 13 4 3 16 16 C 1.39413 * 119.72895 * 173.39926 * 15 13 4 17 17 C 1.38539 * 119.05045 * 179.97438 * 16 15 13 18 18 C 1.38665 * 118.50113 * 0.02562 * 17 16 15 19 19 C 1.38548 * 119.36553 * 0.27251 * 18 17 16 20 20 N 1.31532 * 120.91204 * 359.45080 * 19 18 17 21 21 H 4.40639 * 5.51292 * 179.97438 * 4 1 2 22 22 H 1.09002 * 109.47758 * 305.75228 * 3 2 1 23 23 H 1.08998 * 109.47075 * 185.75141 * 3 2 1 24 24 H 0.96997 * 120.00259 * 179.97438 * 8 7 5 25 25 H 1.07999 * 120.47417 * 0.02843 * 16 15 13 26 26 H 1.07998 * 120.74951 * 180.02562 * 17 16 15 27 27 H 1.07993 * 120.31787 * 179.97438 * 18 17 16 28 28 H 1.08006 * 119.54224 * 179.72443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5664 -1.2594 5 6 3.4803 -1.8881 -1.3257 6 1 3.2366 -2.4666 -2.2046 7 6 4.1457 -2.4873 -0.2612 8 7 4.1954 -3.7965 -0.1710 9 14 4.9688 -1.4297 1.0401 10 1 3.9986 -1.1354 2.1251 11 1 6.1355 -2.1556 1.6028 12 1 5.4265 -0.1570 0.4268 13 6 3.2434 0.2142 -2.3526 14 8 3.6036 -0.2665 -3.4095 15 6 2.9242 1.6570 -2.2664 16 6 3.1694 2.4858 -3.3603 17 6 2.8649 3.8339 -3.2644 18 6 2.3260 4.3078 -2.0779 19 6 2.1144 3.4281 -1.0287 20 7 2.4076 2.1514 -1.1477 21 1 -1.0499 -0.0002 0.0000 22 1 3.0097 -0.5996 0.8340 23 1 3.0088 1.0233 0.1030 24 1 4.6598 -4.2142 0.5711 25 1 3.5900 2.0826 -4.2696 26 1 3.0432 4.5007 -4.0951 27 1 2.0780 5.3534 -1.9711 28 1 1.6989 3.7950 -0.1017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379712682.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:04 Heat of formation + Delta-G solvation = 95.554670 kcal Electronic energy + Delta-G solvation = -15505.530246 eV Core-core repulsion = 12911.009942 eV Total energy + Delta-G solvation = -2594.520304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21660 -38.15076 -35.41383 -32.81055 -32.17150 -31.50231 -30.94862 -26.63546 -25.73240 -23.44407 -23.01989 -19.83350 -18.43188 -17.04006 -16.62442 -16.36508 -15.64247 -15.46947 -14.70567 -14.30123 -13.73315 -13.42876 -13.35759 -12.93842 -12.50253 -12.30369 -12.26942 -11.57837 -10.99563 -10.69729 -10.21362 -9.86718 -9.69999 -9.46187 -9.22167 -9.00355 -8.87238 -8.49303 -7.87341 -6.48142 -4.06254 1.02179 1.43545 2.99592 3.16161 3.21445 3.34407 3.51981 3.65501 4.07176 4.27446 4.35998 4.70284 4.91594 4.93487 5.16383 5.24232 5.31399 5.35487 5.67921 5.93838 6.08620 6.20851 6.29476 6.44984 6.63718 6.90033 7.44965 8.03807 8.19119 8.36052 8.43587 8.82955 9.18301 9.65345 10.62500 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.010071 C = 0.009283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.247753 B = 2779.604768 C = 3015.414600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.136 4.136 3 C 0.176 3.824 4 N -0.432 5.432 5 C -0.313 4.313 6 H 0.111 0.889 7 C 0.062 3.938 8 N -0.854 5.854 9 Si 0.879 3.121 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.503 3.497 14 O -0.558 6.558 15 C 0.105 3.895 16 C -0.125 4.125 17 C -0.083 4.083 18 C -0.175 4.175 19 C 0.091 3.909 20 N -0.459 5.459 21 H 0.208 0.792 22 H 0.084 0.916 23 H 0.129 0.871 24 H 0.278 0.722 25 H 0.145 0.855 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 15.043 1.271 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.138 4.138 3 C 0.054 3.946 4 N -0.149 5.149 5 C -0.440 4.440 6 H 0.128 0.872 7 C -0.146 4.146 8 N -0.489 5.489 9 Si 0.706 3.294 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.184 1.184 13 C 0.291 3.709 14 O -0.440 6.440 15 C -0.033 4.033 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.195 4.195 19 C -0.068 4.068 20 N -0.171 5.171 21 H 0.225 0.775 22 H 0.101 0.899 23 H 0.146 0.854 24 H 0.088 0.912 25 H 0.162 0.838 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.291 13.975 1.520 14.437 hybrid contribution 0.235 1.004 0.135 1.040 sum -3.057 14.979 1.655 15.377 Atomic orbital electron populations 1.24522 0.95507 1.04571 1.01791 1.23401 0.94424 0.96998 0.98929 1.19588 0.84653 1.01721 0.88615 1.43567 1.53895 1.09392 1.08095 1.19183 1.36110 0.82495 1.06250 0.87197 1.25432 0.95747 0.95575 0.97808 1.69651 1.39142 1.08903 1.31215 0.86968 0.79518 0.81480 0.81447 1.19455 1.20964 1.18373 1.17786 0.83605 0.83614 0.85867 1.90656 1.51312 1.73636 1.28347 1.21824 0.95433 0.96271 0.89816 1.22088 0.99262 0.93453 0.99832 1.21530 0.96322 0.95212 0.97775 1.22178 1.01497 1.01060 0.94773 1.22894 0.96133 0.89066 0.98675 1.68217 1.10521 1.14392 1.23972 0.77500 0.89915 0.85389 0.91170 0.83762 0.84789 0.85091 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.61 19.25 29.55 0.57 -4.04 15 2 C -0.14 -2.92 12.29 -37.12 -0.46 -3.38 15 3 C 0.18 3.99 4.03 -6.83 -0.03 3.97 15 4 N -0.43 -11.23 2.15 -118.96 -0.26 -11.48 15 5 C -0.31 -9.11 9.39 -15.02 -0.14 -9.25 15 6 H 0.11 3.55 7.92 -52.48 -0.42 3.14 15 7 C 0.06 1.73 5.36 -17.45 -0.09 1.64 15 8 N -0.85 -24.70 13.95 55.50 0.77 -23.93 15 9 Si 0.88 20.63 24.92 -169.99 -4.24 16.39 15 10 H -0.27 -5.85 6.49 56.52 0.37 -5.48 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 12 H -0.26 -6.03 7.11 56.52 0.40 -5.63 15 13 C 0.50 12.68 7.54 -12.25 -0.09 12.59 15 14 O -0.56 -15.57 16.22 5.30 0.09 -15.48 15 15 C 0.10 2.12 6.62 -83.01 -0.55 1.57 15 16 C -0.13 -2.10 9.63 -39.03 -0.38 -2.47 15 17 C -0.08 -1.04 10.17 -39.31 -0.40 -1.44 15 18 C -0.17 -2.02 10.11 -39.31 -0.40 -2.42 15 19 C 0.09 1.24 11.18 -17.57 -0.20 1.05 15 20 N -0.46 -8.32 5.01 -9.81 -0.05 -8.37 15 21 H 0.21 2.98 7.80 -54.10 -0.42 2.55 15 22 H 0.08 1.92 3.19 -51.93 -0.17 1.76 15 23 H 0.13 2.67 5.18 -52.98 -0.27 2.39 15 24 H 0.28 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.14 2.39 7.66 -52.49 -0.40 1.99 15 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 28 H 0.15 1.61 8.06 -52.48 -0.42 1.19 15 LS Contribution 252.76 15.07 3.81 3.81 Total: -1.00 -32.87 252.76 -4.15 -37.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.12 Total: 4.24 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.16 Total: -2.20 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.47 Total: -43.78 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.24 Total: 16.39 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.87 -4.15 -37.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379712682.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.579 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds