Wall clock time and date at job start Sun Mar 29 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47198 * 65.75111 * 3 2 1 5 5 C 1.36781 * 119.99950 * 263.97969 * 4 3 2 6 6 H 1.08005 * 119.99948 * 140.84481 * 5 4 3 7 7 C 1.39102 * 120.00144 * 320.84529 * 5 4 3 8 8 N 1.31323 * 120.00368 * 163.62530 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 343.62266 * 7 5 4 10 10 H 1.48496 * 109.47232 * 89.61708 * 9 7 5 11 11 H 1.48493 * 109.47516 * 209.62328 * 9 7 5 12 12 H 1.48503 * 109.46967 * 329.62190 * 9 7 5 13 13 C 1.34773 * 120.00154 * 83.97642 * 4 3 2 14 14 O 1.21570 * 120.00383 * 182.60377 * 13 4 3 15 15 C 1.48014 * 119.99713 * 2.60190 * 13 4 3 16 16 C 1.39413 * 119.72895 * 173.39926 * 15 13 4 17 17 C 1.38539 * 119.05045 * 179.97438 * 16 15 13 18 18 C 1.38665 * 118.50113 * 0.02562 * 17 16 15 19 19 C 1.38548 * 119.36553 * 0.27251 * 18 17 16 20 20 N 1.31532 * 120.91204 * 359.45080 * 19 18 17 21 21 H 4.40639 * 5.51292 * 179.97438 * 4 1 2 22 22 H 1.09002 * 109.47758 * 305.75228 * 3 2 1 23 23 H 1.08998 * 109.47075 * 185.75141 * 3 2 1 24 24 H 0.96997 * 120.00259 * 179.97438 * 8 7 5 25 25 H 1.07999 * 120.47417 * 0.02843 * 16 15 13 26 26 H 1.07998 * 120.74951 * 180.02562 * 17 16 15 27 27 H 1.07993 * 120.31787 * 179.97438 * 18 17 16 28 28 H 1.08006 * 119.54224 * 179.72443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5664 -1.2594 5 6 3.4803 -1.8881 -1.3257 6 1 3.2366 -2.4666 -2.2046 7 6 4.1457 -2.4873 -0.2612 8 7 4.1954 -3.7965 -0.1710 9 14 4.9688 -1.4297 1.0401 10 1 3.9986 -1.1354 2.1251 11 1 6.1355 -2.1556 1.6028 12 1 5.4265 -0.1570 0.4268 13 6 3.2434 0.2142 -2.3526 14 8 3.6036 -0.2665 -3.4095 15 6 2.9242 1.6570 -2.2664 16 6 3.1694 2.4858 -3.3603 17 6 2.8649 3.8339 -3.2644 18 6 2.3260 4.3078 -2.0779 19 6 2.1144 3.4281 -1.0287 20 7 2.4076 2.1514 -1.1477 21 1 -1.0499 -0.0002 0.0000 22 1 3.0097 -0.5996 0.8340 23 1 3.0088 1.0233 0.1030 24 1 4.6598 -4.2142 0.5711 25 1 3.5900 2.0826 -4.2696 26 1 3.0432 4.5007 -4.0951 27 1 2.0780 5.3534 -1.9711 28 1 1.6989 3.7950 -0.1017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379712682.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:04 Heat of formation + Delta-G solvation = 72.429007 kcal Electronic energy + Delta-G solvation = -15506.533050 eV Core-core repulsion = 12911.009942 eV Total energy + Delta-G solvation = -2595.523108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.65237 -39.82142 -37.34015 -34.68019 -33.44845 -33.26023 -32.24057 -28.41134 -27.56659 -24.86542 -24.26343 -21.50891 -20.19657 -18.80915 -18.15994 -17.98529 -17.24195 -16.68767 -16.36476 -15.84567 -15.36131 -15.01664 -14.83186 -14.64865 -14.26394 -14.13664 -13.65938 -12.93457 -12.76527 -12.57811 -12.03647 -11.39624 -11.31936 -11.09413 -10.83406 -10.74310 -10.18837 -10.04755 -9.79547 -8.60602 -6.28661 -0.23754 0.34306 1.14158 1.25108 1.37979 1.73208 1.92510 2.07158 2.10798 2.68012 2.79715 3.03948 3.37787 3.71650 3.87585 4.04378 4.15227 4.17123 4.32088 4.47027 4.81640 4.93939 5.12411 5.18148 5.22453 5.43934 5.77267 5.91565 6.38062 6.72139 6.83298 6.91445 7.10652 7.67055 8.55655 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.010071 C = 0.009283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.247753 B = 2779.604768 C = 3015.414600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.181 3.819 4 N -0.448 5.448 5 C -0.342 4.342 6 H 0.049 0.951 7 C 0.018 3.982 8 N -0.901 5.901 9 Si 0.946 3.054 10 H -0.236 1.236 11 H -0.273 1.273 12 H -0.258 1.258 13 C 0.498 3.502 14 O -0.606 6.606 15 C 0.064 3.936 16 C -0.132 4.132 17 C -0.072 4.072 18 C -0.138 4.138 19 C 0.085 3.915 20 N -0.478 5.478 21 H 0.251 0.749 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.285 0.715 25 H 0.132 0.868 26 H 0.178 0.822 27 H 0.186 0.814 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 19.928 2.895 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.195 4.195 3 C 0.061 3.939 4 N -0.166 5.166 5 C -0.470 4.470 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.538 5.538 9 Si 0.769 3.231 10 H -0.161 1.161 11 H -0.199 1.199 12 H -0.182 1.182 13 C 0.288 3.712 14 O -0.491 6.491 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.097 4.097 18 C -0.158 4.158 19 C -0.074 4.074 20 N -0.191 5.191 21 H 0.267 0.733 22 H 0.090 0.910 23 H 0.165 0.835 24 H 0.095 0.905 25 H 0.150 0.850 26 H 0.195 0.805 27 H 0.203 0.797 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.519 18.859 3.154 19.648 hybrid contribution 0.432 -0.281 -0.516 0.730 sum -4.086 18.578 2.638 19.204 Atomic orbital electron populations 1.25493 0.96355 1.01843 0.98841 1.23503 0.94906 0.99552 1.01576 1.19632 0.85915 1.02064 0.86327 1.43629 1.54954 1.08283 1.09724 1.18752 1.38670 0.84373 1.05197 0.93345 1.26220 0.95435 0.96850 1.00101 1.69758 1.40391 1.10787 1.32823 0.85908 0.78940 0.79314 0.78980 1.16091 1.19932 1.18207 1.18728 0.81642 0.86111 0.84713 1.90589 1.52939 1.75529 1.30029 1.21039 1.00201 0.93399 0.92554 1.22163 0.99403 0.95382 0.98389 1.22016 0.94629 0.93341 0.99744 1.22798 0.97124 1.03127 0.92727 1.23638 0.95291 0.87552 1.00966 1.67927 1.10895 1.17066 1.23230 0.73299 0.91032 0.83474 0.90468 0.85010 0.80451 0.79697 0.79016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.31 19.25 74.32 1.43 -5.88 15 2 C -0.19 -8.21 12.29 31.12 0.38 -7.83 15 3 C 0.18 8.28 4.03 84.57 0.34 8.63 15 4 N -0.45 -24.56 2.15 -648.54 -1.40 -25.95 15 5 C -0.34 -21.58 9.39 84.13 0.79 -20.79 15 6 H 0.05 3.52 7.92 -2.91 -0.02 3.50 15 7 C 0.02 1.04 5.36 84.98 0.46 1.49 15 8 N -0.90 -55.16 13.95 21.69 0.30 -54.86 15 9 Si 0.95 43.55 24.92 68.60 1.71 45.26 15 10 H -0.24 -9.61 6.49 99.48 0.65 -8.96 15 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 15 13 C 0.50 26.58 7.54 86.84 0.65 27.23 15 14 O -0.61 -36.67 16.22 -3.94 -0.06 -36.73 15 15 C 0.06 2.59 6.62 41.88 0.28 2.87 15 16 C -0.13 -4.26 9.63 22.62 0.22 -4.04 15 17 C -0.07 -1.45 10.17 22.44 0.23 -1.22 15 18 C -0.14 -2.26 10.11 22.45 0.23 -2.03 15 19 C 0.08 1.88 11.18 84.81 0.95 2.83 15 20 N -0.48 -16.32 5.01 -184.94 -0.93 -17.25 15 21 H 0.25 6.11 7.80 -4.42 -0.03 6.08 15 22 H 0.07 3.32 3.19 -2.39 -0.01 3.32 15 23 H 0.15 6.01 5.18 -4.46 -0.02 5.99 15 24 H 0.29 15.80 8.31 -92.71 -0.77 15.03 15 25 H 0.13 4.46 7.66 -2.91 -0.02 4.44 15 26 H 0.18 2.08 8.06 -2.91 -0.02 2.05 15 27 H 0.19 1.21 8.06 -2.91 -0.02 1.19 15 28 H 0.19 2.76 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -81.87 252.76 6.69 -75.19 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.11 Total: 13.09 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.95 Total: 1.25 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -2.02 Total: -98.06 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.06 Total: -36.73 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.71 Total: 45.26 kcal Total: -81.87 6.69 -75.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379712682.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.616 kcal (2) G-P(sol) polarization free energy of solvation -81.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds