Wall clock time and date at job start Sun Mar 29 2020 21:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47024 * 25.30390 * 3 2 1 5 5 C 1.36797 * 119.99648 * 274.85846 * 4 3 2 6 6 H 1.07998 * 119.99879 * 187.92578 * 5 4 3 7 7 C 1.39104 * 120.00104 * 7.91959 * 5 4 3 8 8 N 1.31328 * 119.99793 * 17.04290 * 7 5 4 9 9 Si 1.86800 * 120.00444 * 197.04659 * 7 5 4 10 10 H 1.48498 * 109.47281 * 89.99904 * 9 7 5 11 11 H 1.48503 * 109.47391 * 210.00332 * 9 7 5 12 12 H 1.48502 * 109.46583 * 329.99938 * 9 7 5 13 13 C 1.34774 * 120.00527 * 94.86358 * 4 3 2 14 14 O 1.21558 * 119.99935 * 185.04112 * 13 4 3 15 15 C 1.47986 * 119.99740 * 5.04058 * 13 4 3 16 16 C 1.39912 * 120.93023 * 313.01057 * 15 13 4 17 17 C 1.38101 * 118.99447 * 179.97438 * 16 15 13 18 18 N 1.31844 * 120.90292 * 0.02562 * 17 16 15 19 19 C 1.31839 * 122.06783 * 0.02562 * 18 17 16 20 20 C 1.38099 * 120.90211 * 359.97438 * 19 18 17 21 21 H 4.40637 * 5.51408 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47160 * 265.30133 * 3 2 1 23 23 H 1.09008 * 109.46866 * 145.29875 * 3 2 1 24 24 H 0.97005 * 120.00204 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.50589 * 359.70683 * 16 15 13 26 26 H 1.08000 * 119.54784 * 179.97438 * 17 16 15 27 27 H 1.07993 * 119.54693 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.50531 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2478 -0.5904 5 6 3.2688 -2.3655 0.1870 6 1 3.7474 -3.2472 -0.2129 7 6 2.7886 -2.3663 1.4925 8 7 1.9273 -1.4521 1.8759 9 14 3.3688 -3.6678 2.7004 10 1 4.5791 -3.1805 3.4096 11 1 2.2935 -3.9419 3.6872 12 1 3.6951 -4.9157 1.9644 13 6 3.4529 -1.2953 -1.8992 14 8 3.7706 -2.3518 -2.4096 15 6 3.4152 -0.0611 -2.7150 16 6 2.3215 0.8091 -2.6524 17 6 2.3284 1.9499 -3.4307 18 7 3.3457 2.2224 -4.2238 19 6 4.3951 1.4294 -4.3138 20 6 4.4718 0.2676 -3.5712 21 1 -1.0498 -0.0003 -0.0003 22 1 3.0093 0.0850 1.0242 23 1 3.0090 0.8458 -0.5851 24 1 1.5921 -1.4528 2.7862 25 1 1.4826 0.5899 -2.0085 26 1 1.4885 2.6277 -3.3896 27 1 5.2057 1.6920 -4.9772 28 1 5.3343 -0.3776 -3.6502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379713738.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:08 Heat of formation + Delta-G solvation = 82.821701 kcal Electronic energy + Delta-G solvation = -15442.364972 eV Core-core repulsion = 12847.292524 eV Total energy + Delta-G solvation = -2595.072447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05025 -38.23163 -35.40789 -32.70938 -31.64835 -31.36408 -30.78158 -26.65808 -25.43290 -23.31495 -23.02387 -19.84166 -18.08963 -17.12961 -16.54176 -15.95122 -15.60422 -15.11457 -14.39420 -14.08860 -14.05715 -13.43137 -13.35113 -12.71898 -12.47571 -12.21769 -11.65381 -11.21616 -11.07548 -10.60307 -10.46030 -9.60865 -9.58561 -9.33004 -9.24446 -8.93910 -8.76874 -8.54498 -8.13252 -6.47301 -3.98985 1.35908 1.44319 3.06046 3.16326 3.20967 3.56112 3.74692 3.96557 4.06232 4.21423 4.67436 4.71016 4.92006 5.21008 5.38849 5.45396 5.49415 5.54985 5.92206 6.08180 6.16413 6.30394 6.61136 6.75310 6.96307 6.99401 7.38252 7.81451 8.21837 8.24669 8.75528 8.94000 9.15045 9.69876 10.46845 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.008879 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.344328 B = 3152.688585 C = 3712.730040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.099 4.099 3 C 0.223 3.777 4 N -0.421 5.421 5 C -0.309 4.309 6 H 0.111 0.889 7 C 0.031 3.969 8 N -0.859 5.859 9 Si 0.932 3.068 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.469 3.531 14 O -0.579 6.579 15 C -0.048 4.048 16 C -0.158 4.158 17 C 0.090 3.910 18 N -0.490 5.490 19 C 0.088 3.912 20 C -0.137 4.137 21 H 0.200 0.800 22 H 0.116 0.884 23 H 0.065 0.935 24 H 0.272 0.728 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 6.535 -2.964 7.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.101 4.101 3 C 0.101 3.899 4 N -0.137 5.137 5 C -0.436 4.436 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.497 5.497 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.258 3.742 14 O -0.465 6.465 15 C -0.060 4.060 16 C -0.178 4.178 17 C -0.067 4.067 18 N -0.200 5.200 19 C -0.069 4.069 20 C -0.158 4.158 21 H 0.217 0.783 22 H 0.134 0.866 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.164 0.836 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.762 6.782 -3.478 7.660 hybrid contribution -0.207 -1.381 1.332 1.930 sum 0.555 5.401 -2.146 5.838 Atomic orbital electron populations 1.24258 0.95336 1.03172 1.05622 1.22812 0.94032 0.97492 0.95728 1.18642 0.84700 0.85651 1.00947 1.43674 1.53406 1.10079 1.06512 1.19842 1.36694 0.93920 0.93173 0.87129 1.25390 0.94978 0.98705 0.98331 1.69992 1.25965 1.34710 1.19013 0.85819 0.78345 0.80492 0.79507 1.20080 1.20848 1.19214 1.17782 0.86826 0.87646 0.81983 1.90631 1.54685 1.30361 1.70775 1.20700 0.94351 0.94809 0.96105 1.22833 0.99616 0.94992 1.00398 1.22619 0.96401 0.95465 0.92192 1.67501 1.01309 1.32118 1.19036 1.22604 0.95957 0.90854 0.97462 1.22203 0.99233 0.97928 0.96446 0.78304 0.86606 0.91707 0.91646 0.83557 0.82834 0.82829 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.30 19.08 29.55 0.56 -4.74 15 2 C -0.10 -2.15 8.65 -37.12 -0.32 -2.47 15 3 C 0.22 4.91 4.77 -6.83 -0.03 4.87 15 4 N -0.42 -10.52 2.59 -118.97 -0.31 -10.83 15 5 C -0.31 -8.27 9.45 -15.02 -0.14 -8.41 15 6 H 0.11 3.11 7.27 -52.49 -0.38 2.73 15 7 C 0.03 0.76 5.12 -17.45 -0.09 0.67 15 8 N -0.86 -21.36 8.47 55.50 0.47 -20.89 15 9 Si 0.93 19.79 29.59 -169.99 -5.03 14.76 15 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 12 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 13 C 0.47 11.56 7.26 -12.27 -0.09 11.47 15 14 O -0.58 -16.20 16.64 5.31 0.09 -16.11 15 15 C -0.05 -0.97 5.01 -104.65 -0.52 -1.49 15 16 C -0.16 -2.83 7.62 -39.01 -0.30 -3.13 15 17 C 0.09 1.39 11.17 -17.60 -0.20 1.20 15 18 N -0.49 -7.84 10.34 -13.32 -0.14 -7.97 15 19 C 0.09 1.32 11.17 -17.60 -0.20 1.12 15 20 C -0.14 -2.37 9.84 -39.00 -0.38 -2.75 15 21 H 0.20 3.23 7.80 -54.10 -0.42 2.81 15 22 H 0.12 2.67 6.34 -51.93 -0.33 2.34 15 23 H 0.07 1.26 5.41 -51.92 -0.28 0.98 15 24 H 0.27 6.47 8.31 -40.82 -0.34 6.13 15 25 H 0.15 2.71 4.58 -52.48 -0.24 2.47 15 26 H 0.15 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.15 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.14 2.23 8.06 -52.49 -0.42 1.81 15 LS Contribution 251.95 15.07 3.80 3.80 Total: -1.00 -30.18 251.95 -4.89 -35.07 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -2.06 Total: 5.83 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.71 Total: -3.65 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.02 Total: -39.69 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.09 Total: -16.11 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.18 -4.89 -35.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379713738.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.888 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds