Wall clock time and date at job start Sun Mar 29 2020 21:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47024 * 25.30390 * 3 2 1 5 5 C 1.36797 * 119.99648 * 274.85846 * 4 3 2 6 6 H 1.07998 * 119.99879 * 187.92578 * 5 4 3 7 7 C 1.39104 * 120.00104 * 7.91959 * 5 4 3 8 8 N 1.31328 * 119.99793 * 17.04290 * 7 5 4 9 9 Si 1.86800 * 120.00444 * 197.04659 * 7 5 4 10 10 H 1.48498 * 109.47281 * 89.99904 * 9 7 5 11 11 H 1.48503 * 109.47391 * 210.00332 * 9 7 5 12 12 H 1.48502 * 109.46583 * 329.99938 * 9 7 5 13 13 C 1.34774 * 120.00527 * 94.86358 * 4 3 2 14 14 O 1.21558 * 119.99935 * 185.04112 * 13 4 3 15 15 C 1.47986 * 119.99740 * 5.04058 * 13 4 3 16 16 C 1.39912 * 120.93023 * 313.01057 * 15 13 4 17 17 C 1.38101 * 118.99447 * 179.97438 * 16 15 13 18 18 N 1.31844 * 120.90292 * 0.02562 * 17 16 15 19 19 C 1.31839 * 122.06783 * 0.02562 * 18 17 16 20 20 C 1.38099 * 120.90211 * 359.97438 * 19 18 17 21 21 H 4.40637 * 5.51408 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47160 * 265.30133 * 3 2 1 23 23 H 1.09008 * 109.46866 * 145.29875 * 3 2 1 24 24 H 0.97005 * 120.00204 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.50589 * 359.70683 * 16 15 13 26 26 H 1.08000 * 119.54784 * 179.97438 * 17 16 15 27 27 H 1.07993 * 119.54693 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.50531 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2478 -0.5904 5 6 3.2688 -2.3655 0.1870 6 1 3.7474 -3.2472 -0.2129 7 6 2.7886 -2.3663 1.4925 8 7 1.9273 -1.4521 1.8759 9 14 3.3688 -3.6678 2.7004 10 1 4.5791 -3.1805 3.4096 11 1 2.2935 -3.9419 3.6872 12 1 3.6951 -4.9157 1.9644 13 6 3.4529 -1.2953 -1.8992 14 8 3.7706 -2.3518 -2.4096 15 6 3.4152 -0.0611 -2.7150 16 6 2.3215 0.8091 -2.6524 17 6 2.3284 1.9499 -3.4307 18 7 3.3457 2.2224 -4.2238 19 6 4.3951 1.4294 -4.3138 20 6 4.4718 0.2676 -3.5712 21 1 -1.0498 -0.0003 -0.0003 22 1 3.0093 0.0850 1.0242 23 1 3.0090 0.8458 -0.5851 24 1 1.5921 -1.4528 2.7862 25 1 1.4826 0.5899 -2.0085 26 1 1.4885 2.6277 -3.3896 27 1 5.2057 1.6920 -4.9772 28 1 5.3343 -0.3776 -3.6502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379713738.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:07 Heat of formation + Delta-G solvation = 63.824691 kcal Electronic energy + Delta-G solvation = -15443.188744 eV Core-core repulsion = 12847.292524 eV Total energy + Delta-G solvation = -2595.896219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55439 -39.89858 -37.31365 -34.42130 -33.25845 -33.08716 -32.10732 -28.44188 -27.20751 -24.90823 -24.33478 -21.50196 -19.87745 -18.78145 -18.28870 -17.48371 -17.06226 -16.66532 -16.14193 -15.78569 -15.67547 -14.81025 -14.68716 -14.44906 -14.20385 -13.95138 -13.46368 -12.82359 -12.55033 -12.54270 -12.18920 -11.38771 -11.25534 -10.90717 -10.82044 -10.51380 -10.28135 -10.14144 -9.99314 -8.37970 -6.00576 -0.08123 0.16358 1.34720 1.40428 1.51660 1.83585 2.02797 2.28580 2.36085 2.83009 2.92909 3.06687 3.55888 3.73915 3.92281 3.99653 4.07827 4.15392 4.53232 4.61808 4.86776 4.90038 4.97542 5.24436 5.36669 5.41230 5.68996 5.88474 6.31354 6.94677 6.99051 7.12473 7.24540 7.79456 8.53365 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.008879 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.344328 B = 3152.688585 C = 3712.730040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.140 4.140 3 C 0.230 3.770 4 N -0.429 5.429 5 C -0.353 4.353 6 H 0.081 0.919 7 C 0.006 3.994 8 N -0.863 5.863 9 Si 0.994 3.006 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.277 1.277 13 C 0.457 3.543 14 O -0.629 6.629 15 C -0.073 4.073 16 C -0.163 4.163 17 C 0.103 3.897 18 N -0.491 5.491 19 C 0.105 3.895 20 C -0.143 4.143 21 H 0.235 0.765 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.278 0.722 25 H 0.140 0.860 26 H 0.191 0.809 27 H 0.197 0.803 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 8.284 -3.093 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.141 4.141 3 C 0.109 3.891 4 N -0.144 5.144 5 C -0.480 4.480 6 H 0.099 0.901 7 C -0.199 4.199 8 N -0.499 5.499 9 Si 0.817 3.183 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.202 1.202 13 C 0.248 3.752 14 O -0.518 6.518 15 C -0.085 4.085 16 C -0.183 4.183 17 C -0.053 4.053 18 N -0.201 5.201 19 C -0.052 4.052 20 C -0.164 4.164 21 H 0.252 0.748 22 H 0.118 0.882 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.157 0.843 26 H 0.208 0.792 27 H 0.214 0.786 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.127 8.579 -3.589 9.300 hybrid contribution -0.063 -1.857 1.323 2.281 sum 0.064 6.722 -2.266 7.094 Atomic orbital electron populations 1.25118 0.96233 1.01209 1.03737 1.22956 0.94475 0.99259 0.97455 1.18577 0.85381 0.85069 1.00119 1.43853 1.53289 1.10567 1.06737 1.19732 1.39168 0.94406 0.94724 0.90074 1.26078 0.94393 1.00598 0.98786 1.70095 1.25323 1.35109 1.19393 0.84924 0.78404 0.77696 0.77257 1.18881 1.19705 1.20234 1.18540 0.85713 0.88763 0.82174 1.90568 1.56699 1.32681 1.71836 1.20473 0.96786 0.93993 0.97217 1.22782 0.98735 0.95587 1.01212 1.23114 0.97103 0.94625 0.90500 1.67665 1.01524 1.32034 1.18828 1.23192 0.96463 0.89098 0.96426 1.22363 0.98722 0.99078 0.96268 0.74836 0.88237 0.89580 0.91165 0.84293 0.79228 0.78645 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.36 19.08 74.32 1.42 -7.95 15 2 C -0.14 -6.03 8.65 31.12 0.27 -5.76 15 3 C 0.23 10.29 4.77 84.57 0.40 10.70 15 4 N -0.43 -22.33 2.59 -648.58 -1.68 -24.01 15 5 C -0.35 -19.76 9.45 84.13 0.80 -18.96 15 6 H 0.08 4.90 7.27 -2.91 -0.02 4.88 15 7 C 0.01 0.29 5.12 84.98 0.44 0.73 15 8 N -0.86 -42.84 8.47 21.69 0.18 -42.66 15 9 Si 0.99 40.91 29.59 68.60 2.03 42.94 15 10 H -0.26 -10.35 7.11 99.48 0.71 -9.65 15 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 13 C 0.46 23.56 7.26 86.83 0.63 24.19 15 14 O -0.63 -37.21 16.64 -3.90 -0.06 -37.28 15 15 C -0.07 -2.97 5.01 -19.88 -0.10 -3.07 15 16 C -0.16 -5.65 7.62 22.64 0.17 -5.47 15 17 C 0.10 2.88 11.17 84.66 0.95 3.83 15 18 N -0.49 -13.96 10.34 -196.05 -2.03 -15.99 15 19 C 0.10 2.82 11.17 84.66 0.95 3.76 15 20 C -0.14 -4.83 9.84 22.64 0.22 -4.61 15 21 H 0.24 6.85 7.80 -4.43 -0.03 6.82 15 22 H 0.10 4.69 6.34 -2.39 -0.02 4.67 15 23 H 0.09 3.38 5.41 -2.38 -0.01 3.36 15 24 H 0.28 12.94 8.31 -92.70 -0.77 12.17 15 25 H 0.14 5.04 4.58 -2.91 -0.01 5.03 15 26 H 0.19 3.89 8.06 -2.91 -0.02 3.86 15 27 H 0.20 3.57 8.06 -2.91 -0.02 3.54 15 28 H 0.14 4.54 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -67.22 251.95 5.76 -61.45 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.18 Total: 18.16 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 6.14 Total: -2.61 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -3.52 Total: -82.65 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.06 Total: -37.28 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -67.22 5.76 -61.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379713738.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.276 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds