Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99560 * 2 1 4 4 H 1.08997 * 110.76475 * 26.79805 * 3 2 1 5 5 C 1.55147 * 110.70281 * 263.59844 * 3 2 1 6 6 C 1.54901 * 101.64899 * 205.96364 * 5 3 2 7 7 N 1.47842 * 104.79673 * 37.07164 * 6 5 3 8 8 C 1.46900 * 111.00092 * 213.63303 * 7 6 5 9 9 C 1.52999 * 109.47234 * 290.84476 * 8 7 6 10 10 O 1.42898 * 109.47177 * 64.99900 * 9 8 7 11 11 C 1.42906 * 113.99821 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46699 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.71972 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47442 * 108.56901 * 335.89940 * 7 6 5 21 21 H 1.09008 * 109.46438 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47454 * 299.99965 * 1 2 3 23 23 H 1.08995 * 109.47192 * 60.00720 * 1 2 3 24 24 H 1.08995 * 110.98744 * 324.05511 * 5 3 2 25 25 H 1.09001 * 110.99087 * 87.83745 * 5 3 2 26 26 H 1.09004 * 110.37544 * 278.23954 * 6 5 3 27 27 H 1.08999 * 110.37371 * 155.90132 * 6 5 3 28 28 H 1.09004 * 109.47620 * 170.84226 * 8 7 6 29 29 H 1.09000 * 109.47446 * 50.84052 * 8 7 6 30 30 H 1.09002 * 109.47235 * 304.99497 * 9 8 7 31 31 H 1.09000 * 109.47628 * 184.99900 * 9 8 7 32 32 H 1.09000 * 109.47490 * 59.99859 * 11 10 9 33 33 H 1.09001 * 109.47232 * 299.99213 * 11 10 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.88550 * 120.39770 * 20 7 6 36 36 H 1.08990 * 109.88991 * 241.58397 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3363 2.0285 0.4595 5 6 2.3811 1.7408 -1.4422 6 6 3.5286 2.7477 -1.1797 7 7 4.2775 2.1777 -0.0396 8 6 4.8212 3.2401 0.8170 9 6 5.9343 3.9778 0.0703 10 8 5.3826 4.6511 -1.0629 11 6 6.3439 5.3747 -1.8340 12 6 5.6558 6.0411 -2.9974 13 1 4.5918 5.9201 -3.1369 14 6 6.3857 6.8009 -3.8867 15 7 7.6824 6.9438 -3.7200 16 14 5.5327 7.6275 -5.3285 17 1 5.0805 8.9833 -4.9251 18 1 6.4806 7.7400 -6.4661 19 1 4.3590 6.8164 -5.7405 20 6 3.3741 1.2956 0.7218 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 2.7330 0.8917 -2.0280 25 1 1.5379 2.2279 -1.9321 26 1 3.1234 3.7249 -0.9171 27 1 4.1726 2.8259 -2.0557 28 1 5.2250 2.8005 1.7291 29 1 4.0279 3.9425 1.0726 30 1 6.6852 3.2613 -0.2628 31 1 6.3975 4.7063 0.7358 32 1 7.1029 4.6869 -2.2066 33 1 6.8158 6.1322 -1.2082 34 1 8.1959 7.4780 -4.3459 35 1 3.7755 0.2824 0.7422 36 1 3.2585 1.6716 1.7382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385293931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = -90.109125 kcal Electronic energy + Delta-G solvation = -16309.600701 eV Core-core repulsion = 13600.979496 eV Total energy + Delta-G solvation = -2708.621205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34122 -37.31300 -36.07815 -32.80767 -31.64480 -28.82238 -28.04380 -26.66411 -26.03653 -22.50979 -21.96995 -21.00930 -20.39137 -17.01806 -16.38261 -16.16648 -15.62060 -15.08261 -14.97263 -14.60612 -14.24714 -13.77932 -13.42806 -13.14767 -12.72822 -12.37472 -12.12555 -11.63976 -11.60427 -11.32781 -11.17896 -11.10986 -10.78215 -10.71476 -10.59845 -10.37300 -9.96717 -9.57747 -9.07632 -8.78888 -8.13945 -8.03509 -6.09672 -4.11301 3.30235 3.35471 3.40302 3.60231 4.22713 4.35577 4.66869 4.83212 4.97721 4.98322 5.16904 5.23780 5.26916 5.35951 5.48503 5.53743 5.64358 5.72152 5.78897 5.94933 6.01897 6.10577 6.16883 6.31099 6.44315 6.66701 7.11802 7.14933 7.25452 7.33873 7.47167 7.80079 8.17472 8.60680 9.02114 9.53552 11.01920 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.005450 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.028841 B = 5136.144494 C = 5806.045499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.065 3.935 4 H 0.066 0.934 5 C -0.154 4.154 6 C 0.060 3.940 7 N -0.522 5.522 8 C 0.055 3.945 9 C 0.065 3.935 10 O -0.394 6.394 11 C 0.195 3.805 12 C -0.513 4.513 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.045 3.955 21 H 0.084 0.916 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.005 0.995 33 H 0.003 0.997 34 H 0.264 0.736 35 H 0.086 0.914 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 -10.421 8.645 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.007 3.993 4 H 0.084 0.916 5 C -0.192 4.192 6 C -0.067 4.067 7 N -0.247 5.247 8 C -0.073 4.073 9 C -0.013 4.013 10 O -0.314 6.314 11 C 0.121 3.879 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.083 4.083 21 H 0.102 0.898 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.522 -10.787 8.334 17.220 hybrid contribution -0.867 1.272 -0.369 1.583 sum -11.389 -9.515 7.966 16.843 Atomic orbital electron populations 1.22766 0.81352 1.02523 0.99894 1.87908 1.19400 1.27486 1.94971 1.23467 0.95001 0.84329 0.96545 0.91594 1.23274 0.99089 1.00352 0.96485 1.22958 0.93450 0.95232 0.95057 1.63659 1.33417 1.18916 1.08721 1.22385 0.97588 0.92284 0.95079 1.22239 0.94931 0.94591 0.89509 1.87853 1.37005 1.67514 1.38998 1.20169 0.88066 0.89923 0.89729 1.21040 0.95460 1.29873 1.08723 0.91680 1.24941 0.94856 0.96471 0.98203 1.69963 1.05944 1.40281 1.37566 0.86368 0.79236 0.79652 0.81413 1.20541 1.21087 1.19657 1.22830 0.90300 0.99539 0.95650 0.89767 0.94245 0.94035 0.89965 0.91074 0.92501 0.88498 0.90346 0.94267 0.93535 0.94228 0.97682 0.97953 0.92685 0.89612 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.38 16 2 O -0.38 -4.79 10.43 -35.23 -0.37 -5.16 16 3 C 0.07 0.83 3.44 -24.91 -0.09 0.75 16 4 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 5 C -0.15 -2.14 6.80 -24.59 -0.17 -2.31 16 6 C 0.06 1.01 5.07 -2.30 -0.01 1.00 16 7 N -0.52 -8.32 5.16 -231.26 -1.19 -9.51 16 8 C 0.05 0.85 5.13 -3.82 -0.02 0.83 16 9 C 0.07 1.23 6.23 37.16 0.23 1.46 16 10 O -0.39 -9.27 7.67 -35.23 -0.27 -9.54 16 11 C 0.20 5.35 5.69 36.01 0.20 5.55 16 12 C -0.51 -14.97 9.43 -34.44 -0.32 -15.29 16 13 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 16 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.04 0.60 6.64 -2.84 -0.02 0.58 16 21 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 22 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.02 7.21 -51.93 -0.37 0.65 16 27 H 0.10 1.91 7.60 -51.93 -0.39 1.52 16 28 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 29 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.15 8.06 -51.93 -0.42 0.74 16 36 H 0.06 0.65 7.55 -51.93 -0.39 0.26 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -31.02 295.64 -7.01 -38.03 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -6.16 Total: -4.29 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 0.81 Total: -4.53 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.46 Total: -35.75 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.64 Total: -14.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.02 -7.01 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385293931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.080 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds