Wall clock time and date at job start Sun Mar 29 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99560 * 2 1 4 4 H 1.08997 * 110.76475 * 26.79805 * 3 2 1 5 5 C 1.55147 * 110.70281 * 263.59844 * 3 2 1 6 6 C 1.54901 * 101.64899 * 205.96364 * 5 3 2 7 7 N 1.47842 * 104.79673 * 37.07164 * 6 5 3 8 8 C 1.46900 * 111.00092 * 213.63303 * 7 6 5 9 9 C 1.52999 * 109.47234 * 290.84476 * 8 7 6 10 10 O 1.42898 * 109.47177 * 64.99900 * 9 8 7 11 11 C 1.42906 * 113.99821 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46699 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.71972 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47442 * 108.56901 * 335.89940 * 7 6 5 21 21 H 1.09008 * 109.46438 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47454 * 299.99965 * 1 2 3 23 23 H 1.08995 * 109.47192 * 60.00720 * 1 2 3 24 24 H 1.08995 * 110.98744 * 324.05511 * 5 3 2 25 25 H 1.09001 * 110.99087 * 87.83745 * 5 3 2 26 26 H 1.09004 * 110.37544 * 278.23954 * 6 5 3 27 27 H 1.08999 * 110.37371 * 155.90132 * 6 5 3 28 28 H 1.09004 * 109.47620 * 170.84226 * 8 7 6 29 29 H 1.09000 * 109.47446 * 50.84052 * 8 7 6 30 30 H 1.09002 * 109.47235 * 304.99497 * 9 8 7 31 31 H 1.09000 * 109.47628 * 184.99900 * 9 8 7 32 32 H 1.09000 * 109.47490 * 59.99859 * 11 10 9 33 33 H 1.09001 * 109.47232 * 299.99213 * 11 10 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.88550 * 120.39770 * 20 7 6 36 36 H 1.08990 * 109.88991 * 241.58397 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3363 2.0285 0.4595 5 6 2.3811 1.7408 -1.4422 6 6 3.5286 2.7477 -1.1797 7 7 4.2775 2.1777 -0.0396 8 6 4.8212 3.2401 0.8170 9 6 5.9343 3.9778 0.0703 10 8 5.3826 4.6511 -1.0629 11 6 6.3439 5.3747 -1.8340 12 6 5.6558 6.0411 -2.9974 13 1 4.5918 5.9201 -3.1369 14 6 6.3857 6.8009 -3.8867 15 7 7.6824 6.9438 -3.7200 16 14 5.5327 7.6275 -5.3285 17 1 5.0805 8.9833 -4.9251 18 1 6.4806 7.7400 -6.4661 19 1 4.3590 6.8164 -5.7405 20 6 3.3741 1.2956 0.7218 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 2.7330 0.8917 -2.0280 25 1 1.5379 2.2279 -1.9321 26 1 3.1234 3.7249 -0.9171 27 1 4.1726 2.8259 -2.0557 28 1 5.2250 2.8005 1.7291 29 1 4.0279 3.9425 1.0726 30 1 6.6852 3.2613 -0.2628 31 1 6.3975 4.7063 0.7358 32 1 7.1029 4.6869 -2.2066 33 1 6.8158 6.1322 -1.2082 34 1 8.1959 7.4780 -4.3459 35 1 3.7755 0.2824 0.7422 36 1 3.2585 1.6716 1.7382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385293931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:25 Heat of formation + Delta-G solvation = -112.599889 kcal Electronic energy + Delta-G solvation = -16310.575974 eV Core-core repulsion = 13600.979496 eV Total energy + Delta-G solvation = -2709.596477 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47514 -38.71480 -37.52557 -34.94438 -33.00168 -30.13894 -29.52659 -28.36780 -26.95003 -24.55758 -23.48401 -22.09277 -21.65098 -18.62432 -17.95994 -17.43928 -17.39523 -16.47054 -16.34425 -15.88998 -15.59192 -15.29261 -14.90096 -14.58563 -14.14364 -13.66966 -13.48705 -13.11896 -12.99979 -12.91579 -12.59487 -12.54403 -12.32629 -12.21449 -12.13508 -11.71462 -11.63195 -11.23090 -10.85598 -10.52657 -10.17675 -9.27891 -8.31253 -6.43309 1.39691 1.42501 1.54378 2.34748 2.69053 3.02825 3.05793 3.23779 3.61142 3.77130 4.00990 4.17162 4.33589 4.37951 4.48013 4.50496 4.55480 4.58269 4.66185 4.74208 4.84477 4.86581 4.90427 4.94714 4.97739 5.14184 5.20436 5.24594 5.55684 5.97511 6.00037 6.13095 6.25119 6.55344 6.83786 7.28666 8.81298 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.005450 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.028841 B = 5136.144494 C = 5806.045499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.073 3.927 4 H 0.082 0.918 5 C -0.148 4.148 6 C 0.064 3.936 7 N -0.539 5.539 8 C 0.063 3.937 9 C 0.055 3.945 10 O -0.399 6.399 11 C 0.210 3.790 12 C -0.543 4.543 13 H 0.062 0.938 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.982 3.018 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.264 1.264 20 C 0.046 3.954 21 H 0.100 0.900 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.051 0.949 32 H -0.020 1.020 33 H -0.016 1.016 34 H 0.270 0.730 35 H 0.084 0.916 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 -10.667 9.101 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C 0.015 3.985 4 H 0.100 0.900 5 C -0.186 4.186 6 C -0.063 4.063 7 N -0.264 5.264 8 C -0.065 4.065 9 C -0.022 4.022 10 O -0.319 6.319 11 C 0.135 3.865 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.572 5.572 16 Si 0.804 3.196 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.082 4.082 21 H 0.118 0.882 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.069 0.931 32 H -0.002 1.002 33 H 0.002 0.998 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.271 -11.054 8.816 18.721 hybrid contribution -0.302 1.270 -0.441 1.378 sum -12.573 -9.784 8.375 17.999 Atomic orbital electron populations 1.22997 0.79499 1.03961 1.00770 1.87886 1.21461 1.27178 1.94976 1.23353 0.95114 0.84976 0.95099 0.89988 1.23206 0.98270 0.99239 0.97879 1.22719 0.93742 0.95624 0.94221 1.63542 1.34536 1.19205 1.09161 1.22377 0.96511 0.92189 0.95381 1.22569 0.96560 0.94687 0.88390 1.87841 1.36284 1.67457 1.40325 1.19774 0.87969 0.89070 0.89681 1.21361 0.95602 1.31070 1.10018 0.91938 1.25953 0.95532 0.96658 1.01102 1.70076 1.07538 1.40726 1.38815 0.85206 0.78264 0.78708 0.77374 1.19259 1.20082 1.18817 1.22853 0.90114 0.98762 0.96434 0.88173 0.92836 0.93657 0.90799 0.89874 0.93904 0.92458 0.86841 0.93841 0.94292 0.93136 1.00186 0.99845 0.92117 0.89777 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.85 113.37 1.23 1.60 16 2 O -0.40 -9.10 10.43 -148.98 -1.55 -10.66 16 3 C 0.07 1.71 3.44 31.78 0.11 1.82 16 4 H 0.08 1.66 7.83 -2.39 -0.02 1.64 16 5 C -0.15 -4.02 6.80 31.98 0.22 -3.80 16 6 C 0.06 2.20 5.07 86.77 0.44 2.64 16 7 N -0.54 -16.75 5.16 -885.58 -4.57 -21.32 16 8 C 0.06 1.87 5.13 86.30 0.44 2.31 16 9 C 0.06 2.10 6.23 71.98 0.45 2.55 16 10 O -0.40 -19.39 7.67 -148.98 -1.14 -20.53 16 11 C 0.21 11.98 5.69 71.24 0.41 12.38 16 12 C -0.54 -32.45 9.43 25.60 0.24 -32.20 16 13 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 16 Si 0.98 44.59 29.54 68.60 2.03 46.61 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 C 0.05 1.12 6.64 86.64 0.58 1.69 16 21 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.05 0.68 8.11 -2.39 -0.02 0.66 16 23 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.56 7.21 -2.39 -0.02 1.54 16 27 H 0.06 2.38 7.60 -2.39 -0.02 2.37 16 28 H 0.11 2.58 8.03 -2.39 -0.02 2.56 16 29 H 0.04 1.26 7.85 -2.39 -0.02 1.25 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 36 H 0.08 1.57 7.55 -2.39 -0.02 1.55 16 Total: -1.00 -67.45 295.64 0.64 -66.81 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.02 Total: 5.71 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.57 Total: -10.20 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -4.29 Total: -77.74 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -2.70 Total: -31.19 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.45 0.64 -66.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385293931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.788 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds