Wall clock time and date at job start Sun Mar 29 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00018 * 2 1 4 4 C 1.53005 * 109.47085 * 199.87600 * 3 2 1 5 5 O 1.42891 * 109.47179 * 65.17010 * 4 3 2 6 6 C 1.42905 * 113.99970 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47178 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00189 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00123 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99676 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47035 * 89.99864 * 11 9 7 13 13 H 1.48503 * 109.47338 * 330.00148 * 11 9 7 14 14 H 1.48498 * 109.47111 * 209.99793 * 11 9 7 15 15 C 1.46898 * 110.99699 * 123.95057 * 2 1 3 16 16 H 1.08998 * 110.43425 * 186.74602 * 15 2 1 17 17 C 1.54816 * 110.48935 * 64.20158 * 15 2 1 18 18 C 1.55223 * 101.99017 * 220.51652 * 17 15 2 19 19 O 1.44389 * 103.56223 * 36.88017 * 18 17 15 20 20 C 1.43744 * 106.97847 * 320.01062 * 19 18 17 21 21 H 1.09006 * 109.47341 * 66.37137 * 1 2 3 22 22 H 1.08998 * 109.47525 * 186.36897 * 1 2 3 23 23 H 1.09000 * 109.47497 * 306.37209 * 1 2 3 24 24 H 1.08998 * 109.47315 * 79.87101 * 3 2 1 25 25 H 1.09000 * 109.47101 * 319.87459 * 3 2 1 26 26 H 1.09002 * 109.46409 * 305.16878 * 4 3 2 27 27 H 1.09001 * 109.46878 * 185.17400 * 4 3 2 28 28 H 1.08991 * 109.46836 * 60.00142 * 6 5 4 29 29 H 1.08996 * 109.46941 * 299.99968 * 6 5 4 30 30 H 0.97001 * 120.00106 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.90310 * 338.64322 * 17 15 2 32 32 H 1.09005 * 110.90353 * 102.24131 * 17 15 2 33 33 H 1.08993 * 110.52023 * 278.38681 * 18 17 15 34 34 H 1.09000 * 110.77756 * 155.49517 * 18 17 15 35 35 H 1.08995 * 109.87889 * 267.09409 * 20 19 18 36 36 H 1.08994 * 110.00386 * 146.00822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4447 1.3613 -0.4904 5 8 3.4822 0.9457 -1.8570 6 6 4.7970 0.9012 -2.4152 7 6 4.7180 0.4535 -3.8520 8 1 3.7595 0.2261 -4.2947 9 6 5.8691 0.3352 -4.6016 10 7 5.8002 -0.0560 -5.8552 11 14 7.5266 0.7307 -3.8363 12 1 8.0951 -0.4973 -3.2247 13 1 7.3535 1.7701 -2.7900 14 1 8.4490 1.2335 -4.8858 15 6 1.9953 -0.7659 1.1376 16 1 3.0787 -0.6618 1.1979 17 6 1.6003 -2.2579 1.0157 18 6 1.2405 -2.6170 2.4823 19 8 0.5998 -1.4211 2.9764 20 6 1.3352 -0.3033 2.4510 21 1 -0.3634 0.4119 -0.9415 22 1 -0.3634 -1.0213 0.1140 23 1 -0.3634 0.6094 0.8274 24 1 1.9569 1.7754 1.0116 25 1 1.3920 1.9922 -0.6623 26 1 4.0286 0.6691 0.1161 27 1 3.8645 2.3635 -0.4037 28 1 5.4086 0.1992 -1.8486 29 1 5.2453 1.8937 -2.3684 30 1 6.6101 -0.1396 -6.3825 31 1 0.7362 -2.3792 0.3625 32 1 2.4407 -2.8550 0.6618 33 1 2.1422 -2.8338 3.0548 34 1 0.5532 -3.4624 2.5159 35 1 2.1014 0.0037 3.1628 36 1 0.6588 0.5281 2.2531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385389993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:09 Heat of formation + Delta-G solvation = -77.494176 kcal Electronic energy + Delta-G solvation = -16483.553418 eV Core-core repulsion = 13775.479239 eV Total energy + Delta-G solvation = -2708.074179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05682 -37.30555 -35.90567 -32.62743 -31.35468 -29.68762 -28.65045 -27.51973 -24.91498 -23.19247 -21.81307 -21.74894 -19.64687 -17.06427 -16.80954 -16.54967 -15.58578 -15.42014 -15.20856 -14.73858 -14.18319 -14.06767 -13.84017 -12.91399 -12.71840 -12.27306 -12.17944 -11.94269 -11.82689 -11.77762 -11.55681 -11.09277 -10.95495 -10.83623 -10.68134 -10.35062 -9.83665 -9.82897 -9.13142 -8.79394 -8.41254 -8.12426 -6.08288 -4.06523 3.25843 3.32731 3.34177 3.70041 4.00234 4.37838 4.49460 4.62460 4.78616 4.95912 4.98877 5.10155 5.23016 5.27707 5.35779 5.44996 5.52062 5.57824 5.65573 5.70378 5.80231 5.88100 5.92917 6.05038 6.13457 6.14290 6.63682 6.66019 7.03725 7.13406 7.17427 7.64106 8.09328 8.72701 9.05015 9.51564 11.04954 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039530 B = 0.005431 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.154328 B = 5154.010965 C = 5248.473567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.515 5.515 3 C 0.057 3.943 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.168 3.832 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.267 1.267 14 H -0.283 1.283 15 C 0.050 3.950 16 H 0.097 0.903 17 C -0.147 4.147 18 C 0.044 3.956 19 O -0.379 6.379 20 C 0.013 3.987 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.025 0.975 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.040 0.960 28 H -0.004 1.004 29 H 0.000 1.000 30 H 0.266 0.734 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -0.924 17.163 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.238 5.238 3 C -0.071 4.071 4 C -0.014 4.014 5 O -0.283 6.283 6 C 0.093 3.907 7 C -0.553 4.553 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.192 1.192 14 H -0.208 1.208 15 C -0.060 4.060 16 H 0.115 0.885 17 C -0.185 4.185 18 C -0.033 4.033 19 O -0.297 6.297 20 C -0.066 4.066 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.014 0.986 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.790 -1.217 16.571 18.351 hybrid contribution 1.232 0.667 1.052 1.752 sum -6.558 -0.549 17.623 18.812 Atomic orbital electron populations 1.22479 0.87427 1.02001 1.00824 1.62034 1.07567 1.13791 1.40381 1.22186 0.96633 0.89262 0.98993 1.22301 0.94893 0.97507 0.86671 1.88003 1.30138 1.88130 1.22035 1.20576 0.80823 0.94498 0.94843 1.20901 0.96057 1.45072 0.93229 0.89925 1.24765 0.98705 0.94815 0.94717 1.69876 1.28800 1.47241 1.07630 0.86861 0.84288 0.79239 0.79400 1.20002 1.19187 1.20823 1.23214 1.00412 0.94288 0.88089 0.88501 1.23256 1.03362 0.95013 0.96869 1.23646 0.97648 0.88688 0.93290 1.88843 1.53471 1.14793 1.72628 1.23933 0.96239 0.90732 0.95700 0.90951 0.91118 0.95653 0.93863 0.89779 0.94658 0.94166 0.98649 0.98276 0.92435 0.89423 0.89484 0.92253 0.88931 0.92507 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.66 60.06 0.52 0.77 16 2 N -0.51 -7.50 4.64 -233.05 -1.08 -8.58 16 3 C 0.06 0.81 5.19 -3.82 -0.02 0.79 16 4 C 0.06 1.13 6.13 37.16 0.23 1.36 16 5 O -0.36 -8.61 10.28 -35.23 -0.36 -8.97 16 6 C 0.17 4.34 4.76 36.01 0.17 4.51 16 7 C -0.51 -15.54 9.99 -34.44 -0.34 -15.88 16 8 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 11 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.05 0.63 2.99 -66.18 -0.20 0.43 16 16 H 0.10 1.27 6.64 -51.93 -0.34 0.92 16 17 C -0.15 -1.69 6.58 -24.60 -0.16 -1.86 16 18 C 0.04 0.44 7.72 38.33 0.30 0.74 16 19 O -0.38 -4.69 11.52 -35.23 -0.41 -5.10 16 20 C 0.01 0.14 6.18 37.73 0.23 0.38 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 0.84 6.02 -51.93 -0.31 0.53 16 23 H 0.03 0.28 6.33 -51.93 -0.33 -0.05 16 24 H 0.04 0.50 7.01 -51.93 -0.36 0.14 16 25 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 26 H 0.04 0.59 6.70 -51.93 -0.35 0.24 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.00 -0.10 7.57 -51.93 -0.39 -0.50 16 29 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 30 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.09 1.05 6.12 -51.93 -0.32 0.73 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.95 5.41 -51.93 -0.28 0.67 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -32.82 284.43 -6.43 -39.25 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.60 Total: -3.90 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 0.63 Total: -6.73 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.31 Total: -35.76 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.77 Total: -14.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.82 -6.43 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385389993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.243 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds