Wall clock time and date at job start Sun Mar 29 2020 21:31:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46895 * 111.00018 * 2 1
4 4 C 1.53005 * 109.47085 * 199.87600 * 3 2 1
5 5 O 1.42891 * 109.47179 * 65.17010 * 4 3 2
6 6 C 1.42905 * 113.99970 * 180.02562 * 5 4 3
7 7 C 1.50701 * 109.47178 * 180.02562 * 6 5 4
8 8 H 1.08000 * 119.99853 * 0.02562 * 7 6 5
9 9 C 1.37878 * 120.00189 * 179.97438 * 7 6 5
10 10 N 1.31510 * 120.00123 * 179.97438 * 9 7 6
11 11 Si 1.86799 * 119.99676 * 359.97438 * 9 7 6
12 12 H 1.48497 * 109.47035 * 89.99864 * 11 9 7
13 13 H 1.48503 * 109.47338 * 330.00148 * 11 9 7
14 14 H 1.48498 * 109.47111 * 209.99793 * 11 9 7
15 15 C 1.46898 * 110.99699 * 123.95057 * 2 1 3
16 16 H 1.08998 * 110.43425 * 186.74602 * 15 2 1
17 17 C 1.54816 * 110.48935 * 64.20158 * 15 2 1
18 18 C 1.55223 * 101.99017 * 220.51652 * 17 15 2
19 19 O 1.44389 * 103.56223 * 36.88017 * 18 17 15
20 20 C 1.43744 * 106.97847 * 320.01062 * 19 18 17
21 21 H 1.09006 * 109.47341 * 66.37137 * 1 2 3
22 22 H 1.08998 * 109.47525 * 186.36897 * 1 2 3
23 23 H 1.09000 * 109.47497 * 306.37209 * 1 2 3
24 24 H 1.08998 * 109.47315 * 79.87101 * 3 2 1
25 25 H 1.09000 * 109.47101 * 319.87459 * 3 2 1
26 26 H 1.09002 * 109.46409 * 305.16878 * 4 3 2
27 27 H 1.09001 * 109.46878 * 185.17400 * 4 3 2
28 28 H 1.08991 * 109.46836 * 60.00142 * 6 5 4
29 29 H 1.08996 * 109.46941 * 299.99968 * 6 5 4
30 30 H 0.97001 * 120.00106 * 180.02562 * 10 9 7
31 31 H 1.08999 * 110.90310 * 338.64322 * 17 15 2
32 32 H 1.09005 * 110.90353 * 102.24131 * 17 15 2
33 33 H 1.08993 * 110.52023 * 278.38681 * 18 17 15
34 34 H 1.09000 * 110.77756 * 155.49517 * 18 17 15
35 35 H 1.08995 * 109.87889 * 267.09409 * 20 19 18
36 36 H 1.08994 * 110.00386 * 146.00822 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 3.4447 1.3613 -0.4904
5 8 3.4822 0.9457 -1.8570
6 6 4.7970 0.9012 -2.4152
7 6 4.7180 0.4535 -3.8520
8 1 3.7595 0.2261 -4.2947
9 6 5.8691 0.3352 -4.6016
10 7 5.8002 -0.0560 -5.8552
11 14 7.5266 0.7307 -3.8363
12 1 8.0951 -0.4973 -3.2247
13 1 7.3535 1.7701 -2.7900
14 1 8.4490 1.2335 -4.8858
15 6 1.9953 -0.7659 1.1376
16 1 3.0787 -0.6618 1.1979
17 6 1.6003 -2.2579 1.0157
18 6 1.2405 -2.6170 2.4823
19 8 0.5998 -1.4211 2.9764
20 6 1.3352 -0.3033 2.4510
21 1 -0.3634 0.4119 -0.9415
22 1 -0.3634 -1.0213 0.1140
23 1 -0.3634 0.6094 0.8274
24 1 1.9569 1.7754 1.0116
25 1 1.3920 1.9922 -0.6623
26 1 4.0286 0.6691 0.1161
27 1 3.8645 2.3635 -0.4037
28 1 5.4086 0.1992 -1.8486
29 1 5.2453 1.8937 -2.3684
30 1 6.6101 -0.1396 -6.3825
31 1 0.7362 -2.3792 0.3625
32 1 2.4407 -2.8550 0.6618
33 1 2.1422 -2.8338 3.0548
34 1 0.5532 -3.4624 2.5159
35 1 2.1014 0.0037 3.1628
36 1 0.6588 0.5281 2.2531
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385389993.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:09
Heat of formation + Delta-G solvation = -77.494176 kcal
Electronic energy + Delta-G solvation = -16483.553418 eV
Core-core repulsion = 13775.479239 eV
Total energy + Delta-G solvation = -2708.074179 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.05682 -37.30555 -35.90567 -32.62743 -31.35468 -29.68762 -28.65045 -27.51973
-24.91498 -23.19247 -21.81307 -21.74894 -19.64687 -17.06427 -16.80954 -16.54967
-15.58578 -15.42014 -15.20856 -14.73858 -14.18319 -14.06767 -13.84017 -12.91399
-12.71840 -12.27306 -12.17944 -11.94269 -11.82689 -11.77762 -11.55681 -11.09277
-10.95495 -10.83623 -10.68134 -10.35062 -9.83665 -9.82897 -9.13142 -8.79394
-8.41254 -8.12426 -6.08288 -4.06523 3.25843 3.32731 3.34177 3.70041
4.00234 4.37838 4.49460 4.62460 4.78616 4.95912 4.98877 5.10155
5.23016 5.27707 5.35779 5.44996 5.52062 5.57824 5.65573 5.70378
5.80231 5.88100 5.92917 6.05038 6.13457 6.14290 6.63682 6.66019
7.03725 7.13406 7.17427 7.64106 8.09328 8.72701 9.05015 9.51564
11.04954
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.039530 B = 0.005431 C = 0.005334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 708.154328 B = 5154.010965 C = 5248.473567
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.515 5.515
3 C 0.057 3.943
4 C 0.065 3.935
5 O -0.364 6.364
6 C 0.168 3.832
7 C -0.515 4.515
8 H 0.083 0.917
9 C 0.071 3.929
10 N -0.897 5.897
11 Si 0.875 3.125
12 H -0.274 1.274
13 H -0.267 1.267
14 H -0.283 1.283
15 C 0.050 3.950
16 H 0.097 0.903
17 C -0.147 4.147
18 C 0.044 3.956
19 O -0.379 6.379
20 C 0.013 3.987
21 H 0.072 0.928
22 H 0.070 0.930
23 H 0.025 0.975
24 H 0.043 0.957
25 H 0.084 0.916
26 H 0.035 0.965
27 H 0.040 0.960
28 H -0.004 1.004
29 H 0.000 1.000
30 H 0.266 0.734
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.059 0.941
34 H 0.092 0.908
35 H 0.057 0.943
36 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.713 -0.924 17.163 18.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 N -0.238 5.238
3 C -0.071 4.071
4 C -0.014 4.014
5 O -0.283 6.283
6 C 0.093 3.907
7 C -0.553 4.553
8 H 0.101 0.899
9 C -0.130 4.130
10 N -0.535 5.535
11 Si 0.702 3.298
12 H -0.200 1.200
13 H -0.192 1.192
14 H -0.208 1.208
15 C -0.060 4.060
16 H 0.115 0.885
17 C -0.185 4.185
18 C -0.033 4.033
19 O -0.297 6.297
20 C -0.066 4.066
21 H 0.090 0.910
22 H 0.089 0.911
23 H 0.043 0.957
24 H 0.061 0.939
25 H 0.102 0.898
26 H 0.053 0.947
27 H 0.058 0.942
28 H 0.014 0.986
29 H 0.017 0.983
30 H 0.076 0.924
31 H 0.106 0.894
32 H 0.105 0.895
33 H 0.077 0.923
34 H 0.111 0.889
35 H 0.075 0.925
36 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -7.790 -1.217 16.571 18.351
hybrid contribution 1.232 0.667 1.052 1.752
sum -6.558 -0.549 17.623 18.812
Atomic orbital electron populations
1.22479 0.87427 1.02001 1.00824 1.62034 1.07567 1.13791 1.40381
1.22186 0.96633 0.89262 0.98993 1.22301 0.94893 0.97507 0.86671
1.88003 1.30138 1.88130 1.22035 1.20576 0.80823 0.94498 0.94843
1.20901 0.96057 1.45072 0.93229 0.89925 1.24765 0.98705 0.94815
0.94717 1.69876 1.28800 1.47241 1.07630 0.86861 0.84288 0.79239
0.79400 1.20002 1.19187 1.20823 1.23214 1.00412 0.94288 0.88089
0.88501 1.23256 1.03362 0.95013 0.96869 1.23646 0.97648 0.88688
0.93290 1.88843 1.53471 1.14793 1.72628 1.23933 0.96239 0.90732
0.95700 0.90951 0.91118 0.95653 0.93863 0.89779 0.94658 0.94166
0.98649 0.98276 0.92435 0.89423 0.89484 0.92253 0.88931 0.92507
0.89707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 8.66 60.06 0.52 0.77 16
2 N -0.51 -7.50 4.64 -233.05 -1.08 -8.58 16
3 C 0.06 0.81 5.19 -3.82 -0.02 0.79 16
4 C 0.06 1.13 6.13 37.16 0.23 1.36 16
5 O -0.36 -8.61 10.28 -35.23 -0.36 -8.97 16
6 C 0.17 4.34 4.76 36.01 0.17 4.51 16
7 C -0.51 -15.54 9.99 -34.44 -0.34 -15.88 16
8 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16
9 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16
10 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16
11 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16
12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16
14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
15 C 0.05 0.63 2.99 -66.18 -0.20 0.43 16
16 H 0.10 1.27 6.64 -51.93 -0.34 0.92 16
17 C -0.15 -1.69 6.58 -24.60 -0.16 -1.86 16
18 C 0.04 0.44 7.72 38.33 0.30 0.74 16
19 O -0.38 -4.69 11.52 -35.23 -0.41 -5.10 16
20 C 0.01 0.14 6.18 37.73 0.23 0.38 16
21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
22 H 0.07 0.84 6.02 -51.93 -0.31 0.53 16
23 H 0.03 0.28 6.33 -51.93 -0.33 -0.05 16
24 H 0.04 0.50 7.01 -51.93 -0.36 0.14 16
25 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16
26 H 0.04 0.59 6.70 -51.93 -0.35 0.24 16
27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.00 -0.10 7.57 -51.93 -0.39 -0.50 16
29 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16
30 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16
31 H 0.09 1.05 6.12 -51.93 -0.32 0.73 16
32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16
35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.08 0.95 5.41 -51.93 -0.28 0.67 16
LS Contribution 284.43 15.07 4.29 4.29
Total: -1.00 -32.82 284.43 -6.43 -39.25
By element:
Atomic # 1 Polarization: 1.70 SS G_CDS: -5.60 Total: -3.90 kcal
Atomic # 6 Polarization: -7.36 SS G_CDS: 0.63 Total: -6.73 kcal
Atomic # 7 Polarization: -35.45 SS G_CDS: -0.31 Total: -35.76 kcal
Atomic # 8 Polarization: -13.30 SS G_CDS: -0.77 Total: -14.07 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -32.82 -6.43 -39.25 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385389993.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.243 kcal
(2) G-P(sol) polarization free energy of solvation -32.820 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds