Wall clock time and date at job start Sun Mar 29 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00018 * 2 1 4 4 C 1.53005 * 109.47085 * 199.87600 * 3 2 1 5 5 O 1.42891 * 109.47179 * 65.17010 * 4 3 2 6 6 C 1.42905 * 113.99970 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47178 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00189 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00123 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99676 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47035 * 89.99864 * 11 9 7 13 13 H 1.48503 * 109.47338 * 330.00148 * 11 9 7 14 14 H 1.48498 * 109.47111 * 209.99793 * 11 9 7 15 15 C 1.46898 * 110.99699 * 123.95057 * 2 1 3 16 16 H 1.08998 * 110.43425 * 186.74602 * 15 2 1 17 17 C 1.54816 * 110.48935 * 64.20158 * 15 2 1 18 18 C 1.55223 * 101.99017 * 220.51652 * 17 15 2 19 19 O 1.44389 * 103.56223 * 36.88017 * 18 17 15 20 20 C 1.43744 * 106.97847 * 320.01062 * 19 18 17 21 21 H 1.09006 * 109.47341 * 66.37137 * 1 2 3 22 22 H 1.08998 * 109.47525 * 186.36897 * 1 2 3 23 23 H 1.09000 * 109.47497 * 306.37209 * 1 2 3 24 24 H 1.08998 * 109.47315 * 79.87101 * 3 2 1 25 25 H 1.09000 * 109.47101 * 319.87459 * 3 2 1 26 26 H 1.09002 * 109.46409 * 305.16878 * 4 3 2 27 27 H 1.09001 * 109.46878 * 185.17400 * 4 3 2 28 28 H 1.08991 * 109.46836 * 60.00142 * 6 5 4 29 29 H 1.08996 * 109.46941 * 299.99968 * 6 5 4 30 30 H 0.97001 * 120.00106 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.90310 * 338.64322 * 17 15 2 32 32 H 1.09005 * 110.90353 * 102.24131 * 17 15 2 33 33 H 1.08993 * 110.52023 * 278.38681 * 18 17 15 34 34 H 1.09000 * 110.77756 * 155.49517 * 18 17 15 35 35 H 1.08995 * 109.87889 * 267.09409 * 20 19 18 36 36 H 1.08994 * 110.00386 * 146.00822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4447 1.3613 -0.4904 5 8 3.4822 0.9457 -1.8570 6 6 4.7970 0.9012 -2.4152 7 6 4.7180 0.4535 -3.8520 8 1 3.7595 0.2261 -4.2947 9 6 5.8691 0.3352 -4.6016 10 7 5.8002 -0.0560 -5.8552 11 14 7.5266 0.7307 -3.8363 12 1 8.0951 -0.4973 -3.2247 13 1 7.3535 1.7701 -2.7900 14 1 8.4490 1.2335 -4.8858 15 6 1.9953 -0.7659 1.1376 16 1 3.0787 -0.6618 1.1979 17 6 1.6003 -2.2579 1.0157 18 6 1.2405 -2.6170 2.4823 19 8 0.5998 -1.4211 2.9764 20 6 1.3352 -0.3033 2.4510 21 1 -0.3634 0.4119 -0.9415 22 1 -0.3634 -1.0213 0.1140 23 1 -0.3634 0.6094 0.8274 24 1 1.9569 1.7754 1.0116 25 1 1.3920 1.9922 -0.6623 26 1 4.0286 0.6691 0.1161 27 1 3.8645 2.3635 -0.4037 28 1 5.4086 0.1992 -1.8486 29 1 5.2453 1.8937 -2.3684 30 1 6.6101 -0.1396 -6.3825 31 1 0.7362 -2.3792 0.3625 32 1 2.4407 -2.8550 0.6618 33 1 2.1422 -2.8338 3.0548 34 1 0.5532 -3.4624 2.5159 35 1 2.1014 0.0037 3.1628 36 1 0.6588 0.5281 2.2531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385389993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:09 Heat of formation + Delta-G solvation = -102.872952 kcal Electronic energy + Delta-G solvation = -16484.653924 eV Core-core repulsion = 13775.479239 eV Total energy + Delta-G solvation = -2709.174686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99842 -38.76902 -37.20086 -34.84128 -32.39433 -31.09386 -29.55205 -29.40496 -25.99811 -24.24274 -23.88223 -22.81275 -20.68825 -19.01785 -18.01114 -17.61694 -17.19361 -16.71377 -16.40513 -16.04645 -15.73713 -15.31755 -14.97173 -14.69621 -14.14511 -13.72168 -13.41501 -13.24094 -12.92901 -12.77200 -12.76607 -12.60436 -12.46092 -12.12480 -11.99487 -11.81410 -11.57676 -11.26756 -10.90820 -10.68508 -10.27319 -9.14757 -8.35868 -6.43353 1.33162 1.36587 1.47452 2.30240 2.76708 2.96675 3.07786 3.15624 3.58555 3.87156 3.96950 4.10403 4.22811 4.26655 4.33397 4.39340 4.51345 4.56412 4.61866 4.63438 4.72044 4.77219 4.82310 4.91689 4.96366 5.04130 5.09252 5.18771 5.46388 5.80089 5.96025 6.12472 6.16793 6.61168 6.83123 7.21504 8.81577 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039530 B = 0.005431 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.154328 B = 5154.010965 C = 5248.473567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.062 3.938 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.180 3.820 7 C -0.543 4.543 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.944 5.944 11 Si 0.956 3.044 12 H -0.260 1.260 13 H -0.245 1.245 14 H -0.273 1.273 15 C 0.047 3.953 16 H 0.092 0.908 17 C -0.149 4.149 18 C 0.048 3.952 19 O -0.395 6.395 20 C 0.019 3.981 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.010 0.990 30 H 0.273 0.727 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 -0.371 19.631 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.066 4.066 4 C -0.022 4.022 5 O -0.313 6.313 6 C 0.104 3.896 7 C -0.581 4.581 8 H 0.046 0.954 9 C -0.186 4.186 10 N -0.583 5.583 11 Si 0.778 3.222 12 H -0.184 1.184 13 H -0.169 1.169 14 H -0.198 1.198 15 C -0.062 4.062 16 H 0.110 0.890 17 C -0.187 4.187 18 C -0.028 4.028 19 O -0.314 6.314 20 C -0.059 4.059 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.615 -0.664 19.059 20.186 hybrid contribution 0.742 0.453 0.245 0.903 sum -5.872 -0.210 19.304 20.179 Atomic orbital electron populations 1.22428 0.86439 1.02404 1.00983 1.61979 1.08719 1.14166 1.41945 1.22142 0.94485 0.89482 1.00442 1.22678 0.97495 0.98456 0.83600 1.87957 1.28954 1.88752 1.25595 1.20270 0.82219 0.94798 0.92319 1.21173 0.94346 1.46433 0.96116 0.95417 1.25851 1.03732 0.93924 0.95050 1.70039 1.30663 1.48079 1.09561 0.85596 0.77540 0.80066 0.79045 1.18446 1.16860 1.19812 1.23238 1.00127 0.94603 0.88273 0.89017 1.23258 1.02910 0.94612 0.97926 1.23741 0.98555 0.88445 0.92082 1.88825 1.54169 1.15605 1.72839 1.23887 0.96414 0.90537 0.95103 0.91829 0.90928 0.94075 0.90479 0.90401 0.93629 0.92464 0.97557 0.97223 0.91844 0.90296 0.89711 0.90909 0.87387 0.91184 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 8.66 127.69 1.11 1.70 16 2 N -0.54 -15.33 4.64 -891.22 -4.13 -19.46 16 3 C 0.06 1.67 5.19 86.31 0.45 2.11 16 4 C 0.05 1.82 6.13 71.98 0.44 2.27 16 5 O -0.39 -18.56 10.28 -148.98 -1.53 -20.09 16 6 C 0.18 9.16 4.76 71.24 0.34 9.50 16 7 C -0.54 -33.71 9.99 25.60 0.26 -33.46 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C 0.01 0.72 5.47 84.66 0.46 1.19 16 10 N -0.94 -60.15 13.96 21.45 0.30 -59.85 16 11 Si 0.96 43.68 27.47 68.60 1.88 45.57 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.25 -10.28 6.54 99.48 0.65 -9.63 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 C 0.05 1.11 2.99 45.91 0.14 1.25 16 16 H 0.09 2.24 6.64 -2.39 -0.02 2.23 16 17 C -0.15 -3.28 6.58 31.98 0.21 -3.07 16 18 C 0.05 0.87 7.72 72.74 0.56 1.43 16 19 O -0.40 -8.91 11.52 -148.98 -1.72 -10.63 16 20 C 0.02 0.39 6.18 72.36 0.45 0.83 16 21 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 22 H 0.07 1.69 6.02 -2.39 -0.01 1.67 16 23 H 0.04 0.84 6.33 -2.39 -0.02 0.83 16 24 H 0.08 1.56 7.01 -2.39 -0.02 1.54 16 25 H 0.08 2.17 7.94 -2.39 -0.02 2.15 16 26 H 0.05 1.42 6.70 -2.39 -0.02 1.40 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 29 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.08 1.86 6.12 -2.39 -0.01 1.84 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.72 5.41 -2.39 -0.01 1.70 16 Total: -1.00 -72.12 284.43 0.21 -71.91 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.99 Total: 8.79 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.41 Total: -16.24 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.83 Total: -79.31 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -3.25 Total: -30.72 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -72.12 0.21 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385389993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.964 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds