Wall clock time and date at job start Sun Mar 29 2020 21:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46821 * 269.99813 * 3 2 1 5 5 H 1.48504 * 109.47204 * 29.99705 * 3 2 1 6 6 H 1.48504 * 109.47330 * 149.99828 * 3 2 1 7 7 C 1.37881 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00096 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47142 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47218 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54272 * 291.62572 * 11 10 9 13 13 O 1.42102 * 110.54259 * 68.37729 * 11 10 9 14 14 C 1.76199 * 104.45230 * 179.97438 * 11 10 9 15 15 N 1.30494 * 125.65560 * 269.69528 * 14 11 10 16 16 C 1.34122 * 109.25982 * 179.88883 * 15 14 11 17 17 C 1.34674 * 108.02264 * 0.37088 * 16 15 14 18 18 N 1.35047 * 125.64792 * 89.99571 * 14 11 10 19 19 H 0.97003 * 126.39674 * 359.97438 * 18 14 11 20 20 H 0.97002 * 119.99491 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47269 * 60.00218 * 9 7 2 22 22 H 1.09001 * 109.47567 * 300.00382 * 9 7 2 23 23 H 1.09001 * 109.47469 * 60.00203 * 10 9 7 24 24 H 1.08998 * 109.47079 * 299.99928 * 10 9 7 25 25 H 1.08008 * 125.99148 * 180.11406 * 16 15 14 26 26 H 1.08000 * 126.59287 * 179.81020 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 16 5.8354 -2.6367 0.0001 12 8 6.3341 -2.1464 -1.2369 13 8 6.3340 -2.1463 1.2371 14 6 6.2751 -4.3429 0.0010 15 7 6.4703 -5.0776 1.0617 16 6 6.7871 -6.3249 0.6838 17 6 6.7962 -6.3627 -0.6624 18 7 6.4714 -5.1057 -1.0960 19 1 6.3965 -4.8167 -2.0189 20 1 -0.4849 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6809 -0.8905 23 1 3.6578 -3.1507 -0.8897 24 1 3.6584 -3.1502 0.8903 25 1 7.0017 -7.1528 1.3435 26 1 7.0168 -7.2202 -1.2808 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388269414.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:50 Heat of formation + Delta-G solvation = -16.846148 kcal Electronic energy + Delta-G solvation = -13790.171655 eV Core-core repulsion = 11190.388142 eV Total energy + Delta-G solvation = -2599.783513 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.20640 -36.89946 -35.74491 -34.04020 -32.80094 -31.56176 -29.94133 -26.08672 -22.92080 -21.77666 -21.11920 -19.71756 -18.36461 -17.17213 -15.93986 -15.77400 -15.69039 -14.92702 -14.37490 -14.32410 -13.92241 -13.73633 -12.84496 -11.98133 -11.89739 -11.81176 -11.51378 -11.31394 -11.30149 -10.50538 -10.44820 -10.39722 -10.19346 -9.75622 -9.45704 -9.05858 -8.69627 -6.19727 -4.22061 0.18971 1.42181 2.67344 2.75016 3.07040 3.24914 3.32963 3.36637 4.04667 4.32528 4.33156 4.72006 4.98758 5.10955 5.15672 5.38384 5.47571 5.60894 6.15860 6.36431 6.73000 6.82790 6.86270 7.48667 7.55028 8.31808 8.80882 9.38914 10.92399 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.049362 B = 0.007016 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.106051 B = 3989.664513 C = 4204.296853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.521 4.521 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.547 4.547 11 S 2.497 3.503 12 O -0.941 6.941 13 O -0.912 6.912 14 C -0.323 4.323 15 N -0.397 5.397 16 C -0.037 4.037 17 C -0.012 4.012 18 N -0.517 5.517 19 H 0.431 0.569 20 H 0.267 0.733 21 H 0.039 0.961 22 H 0.032 0.968 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.181 0.819 26 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -11.192 -3.368 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.097 0.903 9 C -0.048 4.048 10 C -0.682 4.682 11 S 2.673 3.327 12 O -0.938 6.938 13 O -0.908 6.908 14 C -0.662 4.662 15 N -0.117 5.117 16 C -0.190 4.190 17 C -0.152 4.152 18 N -0.120 5.120 19 H 0.271 0.729 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.147 0.853 24 H 0.156 0.844 25 H 0.198 0.802 26 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 12.223 -10.164 -2.530 16.097 hybrid contribution 0.026 -0.352 -1.288 1.335 sum 12.249 -10.516 -3.817 16.589 Atomic orbital electron populations 1.69875 1.06231 1.27359 1.49652 1.24971 0.94826 0.99177 0.94022 0.86928 0.80811 0.83629 0.79132 1.19660 1.20692 1.18422 1.20792 0.87452 0.95069 1.52728 0.90255 1.19516 1.00043 0.86891 0.98400 1.29998 1.16510 1.09891 1.11830 1.06388 0.80229 0.71156 0.74970 1.93548 1.79559 1.75868 1.44828 1.93579 1.78789 1.74792 1.43687 1.37154 1.19994 1.22673 0.86363 1.70264 1.11098 1.02654 1.27733 1.22776 1.07267 0.95800 0.93171 1.23301 1.05726 0.88731 0.97420 1.43117 1.49776 1.09094 1.09984 0.72854 0.92282 0.94321 0.95009 0.85261 0.84426 0.80161 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.74 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 3 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 15 7 C -0.52 -14.14 9.66 -34.44 -0.33 -14.47 15 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 15 9 C -0.01 -0.21 4.05 -27.89 -0.11 -0.32 15 10 C -0.55 -9.65 5.92 37.16 0.22 -9.43 15 11 S 2.50 42.49 5.33 -107.50 -0.57 41.92 15 12 O -0.94 -16.89 17.94 -57.54 -1.03 -17.93 15 13 O -0.91 -18.56 17.93 -57.54 -1.03 -19.59 15 14 C -0.32 -4.91 7.75 -90.38 -0.70 -5.61 15 15 N -0.40 -6.44 11.22 -13.85 -0.16 -6.59 15 16 C -0.04 -0.45 11.87 -17.81 -0.21 -0.66 15 17 C -0.01 -0.12 12.04 -16.56 -0.20 -0.32 15 18 N -0.52 -5.89 6.14 -13.23 -0.08 -5.97 15 19 H 0.43 3.65 8.96 -40.82 -0.37 3.28 15 20 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 21 H 0.04 0.87 7.20 -51.93 -0.37 0.50 15 22 H 0.03 0.69 7.57 -51.93 -0.39 0.30 15 23 H 0.13 1.96 8.14 -51.92 -0.42 1.53 15 24 H 0.14 2.29 8.14 -51.92 -0.42 1.86 15 25 H 0.18 1.54 8.06 -52.48 -0.42 1.12 15 26 H 0.19 0.88 8.06 -52.49 -0.42 0.45 15 LS Contribution 249.92 15.07 3.77 3.77 Total: -1.00 -35.80 249.92 -6.85 -42.65 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -2.41 Total: 0.12 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: -1.43 Total: -28.84 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.54 Total: -38.30 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -2.06 Total: -37.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 42.49 SS G_CDS: -0.57 Total: 41.92 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.80 -6.85 -42.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388269414.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.799 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds